LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g01525	ATGAATCCCTTCTCTTCAGGAACCCGCTTGAGGGACATGATTCGGGCCATACGTGCTTCCAAGACTGCAGCCGAAGAACGTGCTGTAGTTAGAAAAGAATGTGCTGCCATTCGTGCTGCAATAAATGAAAATGATCAAGATTATAGGCATCGGAATTTGGCTAAGCTAATGTTTATCCACATGCTTGGCTACCCCACTCATTTTGGTCAAATGGAATGCCTCAAGTTGATAGCATCACCTGGATTTCCGGAGAAGAGAATAGGTTACCTTGGCCTCATGTTGCTACTTGATGAAAGACAAGAAGTTCTAATGTTGGTCACCAATTCTTTAAAACAAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTTGCGCCAGAGGTTGAAAGATTGCTGCAATTTCGTGACCCAAATATTCGGAAGAAGGCAGCATTATGTTCTATAAGGATCATCAAGAAAGTTCCAGACTTGGCAGAAAATTTTATCAATTCTGCTACTGCCTTACTAAGGGAGAAGCATCATGGAGTTTTGATCACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAATTAGCCCAGAAGCCCTTGAACATGTTCGAAAGAAATGCACAGATGTTTTGGTCAGAACTCTTAGAGATCTAGCAAACAGTCCTTATTCACCAGAATATGATATTGCTGGCATCACAGACCCATTTCTCCATATCAGATTGCTTAAACTTTTGCGAGTGCTGGGCGAAGGTGATGCTGATGCTAGCGACTCTATGAATGACATACTTGCCCAGGTGGCTACAAAGACTGAGTCAAATAAAGTTGCAGGAAACGCCATTTTATATGAATGTGTTCAAACAATTATGAGCATTGAAGATAATGGAGGCTTGCGTGTTCTTGCCATCAACAGCCTGGGAAGATTCTTGTCGAACCGTGATAACAATATCAGATACGTGGCACTAAATATGCTGATGAAGGCTGTAACTGCTGATGGTCAGGCAGTGCAGAGGCACCGTGCAACAATTCTGGAGTGTGTAAAGGATTCAGATGCTTCTATTCGGAAAAGAGCACTTGAACTTGTTTACGTTCTGGTAAATGAAACAAATGTGAAGCCATTAGCAAAAGAACTAATAGATTATCTGGAAGTCAGTGAAAATGATTTCAGGGGAGACCTTACAGCCAAAATTTGCTCCATAGTTTCAAAGTTTTCCCCAGAGAAGATCTGGTACATTGATCAGATGCTCAAGGTTCTGTCTGAGGCTGGAAATTATGTAAAAGATGAAGTATGGCATGCCCTAATTGTTGTAATAACAAATGCTACTGAGCTTCATGGATATACCGTAAGAGCATTATACAGAGCATTTCAGACATCAGCTGAACAGGAATCTCTAGTTCGAGTTACAGTGTGGTGCATTGGAGAGTATGGTGACTTATTAGTCAATAATGTTGGAATGCTTGACATAGAAGATCCAATTACGGTGACTGAGTCGGATGCTGTGGATGTCTTGGAGATTGCTATAAAACGCCATGAATCAGATCTTACCACAAAAGCAATGGCTTTGGTTGCCCTATTAAAGCTTTCTTCACGTTTTCCTTCATGTTCAGAGAGGATCAAGGAAATCATTGTTCAGTTCAAAGGGAACCTCATGCTTGAATTGCAGCAGAGAGCTATAGAATTCAATTCAATTTTAGCAAAGCATCAGAATATTAGGTCTACTCTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTTTATTGGTAGGAAAGCTGGGTCTTTGCCAGGTGCAGCTTCAACTACAACAATGCCTTCAGTTGGTATTCCAAATGGAGAAGCTAAACCTGCAGCTCCACTTATAGATCTACTCGATCTAAGTTCAGATGATGCTCCAGCACCTAGTTCTTCTGGTGGTGATCTTCTTCATGACCTTCTTGGTGTTGATCTGTCACCAGCTCCTCAACAATCAGGTGCAGGTCAACCTTCAAAAAGTGGGACAGATGTTCTTTTGGATCTATTGTCCGTTGGATCACCTGCACAGAGCAGCTCATCTACAGTTGACATTTTATCTTCCAATACAAATGGCAAATCTCCAGTTTCACCATTAGATGATATTTCATCACTTTCGCTTTCTTCAAGAGCAAATTCAAATGCTGGAGCTGCTCCTATGATGGATTTATTGGATGGTTTTGGTCCCAGCCCATCCAAAGAAAACAATGGACCAGTTTATCCATCCATAACAGCATATGAGAGTAGCTCCTTGAGGTTGACATTCAGTTTCTCAAAACAACCAGGAAACCCAGAAACAACAAATATCCAGGCTACCTTTACGAATTTGTCCTCTACTGTCTATACAGACTTTGTTTTCCAGGCAGCAGTTCCAAAGTTTCTTCAACTGCACTTAGATCCAGCTAGTAGCAATACTTTGCCTGCTGCTGGAAATGGATCCGTGACACAAAGTTTGAAAGTCACCAACAGCCAACATGGAAAGAAAAATCTTGTCATGCGCATAAGGATAGCTTACAAGTTGAATGGCAAGGATACACTGGAAGAAGGCCAAATCAATAATTTCCCTCGCGAATTATGA	2622	0.4127	MNPFSSGTRLRDMIRAIRASKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINSATALLREKHHGVLITGVQLCTDLCKISPEALEHVRKKCTDVLVRTLRDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINSLGRFLSNRDNNIRYVALNMLMKAVTADGQAVQRHRATILECVKDSDASIRKRALELVYVLVNETNVKPLAKELIDYLEVSENDFRGDLTAKICSIVSKFSPEKIWYIDQMLKVLSEAGNYVKDEVWHALIVVITNATELHGYTVRALYRAFQTSAEQESLVRVTVWCIGEYGDLLVNNVGMLDIEDPITVTESDAVDVLEIAIKRHESDLTTKAMALVALLKLSSRFPSCSERIKEIIVQFKGNLMLELQQRAIEFNSILAKHQNIRSTLVERMPVLDEATFIGRKAGSLPGAASTTTMPSVGIPNGEAKPAAPLIDLLDLSSDDAPAPSSSGGDLLHDLLGVDLSPAPQQSGAGQPSKSGTDVLLDLLSVGSPAQSSSSTVDILSSNTNGKSPVSPLDDISSLSLSSRANSNAGAAPMMDLLDGFGPSPSKENNGPVYPSITAYESSSLRLTFSFSKQPGNPETTNIQATFTNLSSTVYTDFVFQAAVPKFLQLHLDPASSNTLPAAGNGSVTQSLKVTNSQHGKKNLVMRIRIAYKLNGKDTLEEGQINNFPREL	873

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip05g01525	873	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	5	873	-	-
	Aip05g01525	873	Gene3D	-	2	594	IPR011989	-
	Aip05g01525	873	PIRSF	AP1_gamma	6	873	IPR017107	GO:0005794\|GO:0016192\|GO:0030121
	Aip05g01525	873	SUPERFAMILY	Clathrin adaptor appendage domain	732	871	IPR013041	-
	Aip05g01525	873	Pfam	Adaptin C-terminal domain	756	870	IPR008152	GO:0006886\|GO:0016192
	Aip05g01525	873	Gene3D	-	742	872	-	-
	Aip05g01525	873	MobiDBLite	consensus disorder prediction	637	678	-	-
	Aip05g01525	873	ProSiteProfiles	Gamma-adaptin ear (GAE) domain profile.	753	870	IPR008153	-
	Aip05g01525	873	Pfam	Adaptin N terminal region	27	578	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Aip05g01525	873	PANTHER	AP-1 COMPLEX SUBUNIT GAMMA	5	873	-	-
	Aip05g01525	873	SMART	alpha_adaptinc2	750	870	IPR008152	GO:0006886\|GO:0016192
	Aip05g01525	873	MobiDBLite	consensus disorder prediction	691	715	-	-
	Aip05g01525	873	SUPERFAMILY	ARM repeat	25	593	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g01525	Aip-Chr5	25528838	25539584	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g01525	K12391		-	gmx:100802164	1471.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip05g01525	05	25528838	25539584	Aip05g01525	05	25528838	25539584	ECH