Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01515 ATGGCGGCAGAAGAGAGCATAGTTGACTCCACCGATTTTCCCGTCAAGAGGCCAAGGGAGAACGAAGAGAATGGCTCAGCTTCCACCCTCACCGTCGACGCCGCCGCCGCAAAGGACCCGAACGGAATCTCTGCCGTTATCCCTGGCTGGTTCTCCGAAATCAGCCCAATGTGGCCCGGGGAGGCTCACTCGTTGAAGGTGGAAAAGATTTTGTTTCAAGAGAAGTCTGACTACCAGAATGTCATGGTCTTCCAGTCTTCGACATATGGCAAGGTTCTTGTTCTAGATGGAGTCATTCAGCTGACAGAAAGGGATGAATGTGCTTATCAAGAGATGATCACTCATCTTCCTCTTTGCTCGATTCCAGATCCAAAAAAGGTTTTGGTTATTGGGGGAGGTGATGGTGGAGTCCTGCGGGAAGTAGCACGCCATTCTTCTGTAGAAAAGATAGACATCTGTGAGATAGACAAGATGGTTGTCGATGTCTCCAAACAATTTTTCCCTGATGTAGCTATAGGTTATGAGGACCCACGTGTAACACTTCATGTTGGCGATGGTGTTGCATTTTTGAAGGCAGTCCCAGAAGGAACCTATGACGCAATTATAGTGGATTCGTCTGATCCTATTGGTCCTGCCCAAGAGCTTTTTGAGAAACCTTTTTTCGAGTCGATTGCAAGGGCTCTTCGTCCAGGAGGTGTCGTGTGTACTCAAGCAGAAAGTATTTGGCTCCACATGCATATCATCGAGGACATCGTTGCAAATTGTCGCCAGATATTTAAAGGTTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCGAGTGGGATGATTGGTTTCATGCTTTGCTCAACTGAGGGGCCTGCTGTAGATTTCAAGCATCCGGTGAATCGCATAGATGAGAATGATCAGAACTCGGCGAAGCCACTGAAATTTTACAACTCTGAGCTTCATACAGCTGCGTTCTGTTTGCCATCTTTTGCTAAGAGGGCCATTGGTTCCAAAGCAAACTGA 1014 0.4744 MAAEESIVDSTDFPVKRPRENEENGSASTLTVDAAAAKDPNGISAVIPGWFSEISPMWPGEAHSLKVEKILFQEKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPDPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPDVAIGYEDPRVTLHVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFESIARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKHPVNRIDENDQNSAKPLKFYNSELHTAAFCLPSFAKRAIGSKAN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01515 337 PIRSF Spermidine_synth 39 337 IPR030668 GO:0006595
Aip05g01515 337 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 127 140 IPR030373 -
Aip05g01515 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 332 IPR029063 -
Aip05g01515 337 Gene3D Vaccinia Virus protein VP39 101 337 IPR029063 -
Aip05g01515 337 MobiDBLite consensus disorder prediction 1 28 - -
Aip05g01515 337 Hamap Polyamine aminopropyltransferase [speE]. 49 333 IPR001045 GO:0003824
Aip05g01515 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 48 285 IPR030374 -
Aip05g01515 337 CDD AdoMet_MTases 126 237 - -
Aip05g01515 337 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 337 IPR001045 GO:0003824
Aip05g01515 337 Gene3D Spermidine synthase, tetramerisation domain 42 100 IPR037163 -
Aip05g01515 337 Pfam Spermidine synthase tetramerisation domain 49 103 IPR035246 -
Aip05g01515 337 Pfam Spermine/spermidine synthase domain 106 293 - -
Aip05g01515 337 TIGRFAM speE: spermidine synthase 50 327 IPR001045 GO:0003824
Aip05g01515 337 PANTHER SPERMIDINE SYNTHASE-RELATED 3 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01515 Aip-Chr5 25155877 25159829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01515 K00797 - gmx:100790506 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01515 05 25155877 25159829 Aip05g01515 05 25155877 25159829 ECH