Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01486 ATGAGTAGATTGAGTATGAAGAACTTGACCTACATGCTTGTCATTGCAATTCTTATCTGGTCTTCAAGTTTTGAGTCCTGCATTGCAAGAAGAGGCAAGCATTGGAGACATACCAGAGCTTTCTCATCTTCTCTGTATAAGAAGAAAGGTAAGAGTTATTATGGTCATAGTCATAGTCACAATCACAATCACAATCACCATGGTGGAGGATCATCAAAGTCAAAGCCTCCAACACATAAAAAGAGTACTCCATCACCACCTAATCCTCCACCATACACAACCATTCCACCACCACCACCACCACCACCACCAAAGAGTCACAAGCCGAAAGTGGGCGTACCCTCGACTCCGCCGCCGCCACCGAAAGATTGCAATGGTGGCCATTCTATCATATTCAATGTGCTGGATTTTGGAGCTAAGGGAGATGGAAGCACTGATGATACAAAGGCATTCCAAGCCACATGGGGAGCAGCTTGCAAGGTAGAGGCATCAACAATGCTAGTCCCAGCAGATTACACCTTCTATGTGGGACCTATGTCATTCTCAGGCCCATATTGCAAACCAAGCATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAATGCAAATGCTTGGTCTGGAGGACTGCTACAATGGCTGGAGTTTACAAAGCTGGTGGGAATCACCATTCAAGGAAAGGGTGTCATTGATGGAAGAGGCTCAGTTTGGTGGCAAGACCAGCCATTTGATAACCCTATAGATGGTGAAGAAAAGCTCATAGTCCCTTTAAACCACACATGGAAACCACCGGTGCCGGTTCAGAGTGCTATGGGGAGGAAAATGCCAAGCATCAAGCCAACTGCATTAAGATTTTATGGGAGTTTTAACGCAGTAGTGACAGGCATAACAATTCAAAATAGTCCTCAATGCCACCTCAAGTTTGACAACTGCAATGGGGTTCTGGTCCATGATGTTAGCATATCATCCCCTGGTAACAGCCCAAATACAGATGGAATTCACCTTCAGAATTCCAAAGATGTGATGATTCATACCAGCAACTTAGCATGTGGTGATGACTGTATTTCCATACAAACTGGGTGCTCAAATGTATTTGTACACGATGTCAACTGTGGGCCAGGACATGGAATCAGCATTGGAAGCTTAGGGAAGGATAACACCAGAGCCTGTGTCTCAAACATCACTGTCAGAGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAGACATGGCAGGGTGGTTCAGGATCAGTGCAGGGGGTACTATTCTCAAACATACAGGTTTCTGAAGTTCAACTCCCTATTGTGATTGACCAATTCTATTGTGACAAAAGAACATGCACAAACCACACATCAGCTGTGTCTCTGGAAGGAATCAACTATGACAGAATTAAGGGAACTTACACGGTAAAGCCGGTTCACTTCGCATGCAGTGATAGCCTGCCATGCGTGGACGTGTCGTTAAACAAGGTGGAGCTGAAACCAGTTCAGGAGCAATACCATCTATGTAATCCATTCTGCTGGCAGACTTATGGAGAACTGAGATCCCCCACTGTCCCTACTATCGATTGTTTACAGATCGGGAAGCCATCGAGCAACCGGATTCAAACCGATCATGATATCTGTTGA 1638 0.4487 MSRLSMKNLTYMLVIAILIWSSSFESCIARRGKHWRHTRAFSSSLYKKKGKSYYGHSHSHNHNHNHHGGGSSKSKPPTHKKSTPSPPNPPPYTTIPPPPPPPPPKSHKPKVGVPSTPPPPPKDCNGGHSIIFNVLDFGAKGDGSTDDTKAFQATWGAACKVEASTMLVPADYTFYVGPMSFSGPYCKPSIVFQLDGTIIAPTNANAWSGGLLQWLEFTKLVGITIQGKGVIDGRGSVWWQDQPFDNPIDGEEKLIVPLNHTWKPPVPVQSAMGRKMPSIKPTALRFYGSFNAVVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGNSPNTDGIHLQNSKDVMIHTSNLACGDDCISIQTGCSNVFVHDVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCTNHTSAVSLEGINYDRIKGTYTVKPVHFACSDSLPCVDVSLNKVELKPVQEQYHLCNPFCWQTYGELRSPTVPTIDCLQIGKPSSNRIQTDHDIC 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01486 545 Pfam Glycosyl hydrolases family 28 277 498 IPR000743 GO:0004650|GO:0005975
Aip05g01486 545 Pfam Glycosyl hydrolases family 28 161 242 IPR000743 GO:0004650|GO:0005975
Aip05g01486 545 MobiDBLite consensus disorder prediction 80 124 - -
Aip05g01486 545 MobiDBLite consensus disorder prediction 52 69 - -
Aip05g01486 545 ProSitePatterns Polygalacturonase active site. 369 382 IPR000743 GO:0004650|GO:0005975
Aip05g01486 545 SMART pbh1 339 360 IPR006626 -
Aip05g01486 545 SMART pbh1 392 413 IPR006626 -
Aip05g01486 545 SMART pbh1 362 382 IPR006626 -
Aip05g01486 545 SMART pbh1 421 442 IPR006626 -
Aip05g01486 545 SMART pbh1 312 338 IPR006626 -
Aip05g01486 545 Gene3D - 124 539 IPR012334 -
Aip05g01486 545 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 535 - -
Aip05g01486 545 MobiDBLite consensus disorder prediction 52 125 - -
Aip05g01486 545 PANTHER - 6 535 - -
Aip05g01486 545 SUPERFAMILY Pectin lyase-like 130 543 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01486 Aip-Chr5 24104973 24110485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01486 4 545 Glycoside Hydrolase AT1G60590 64.845 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01486 - - aip:107643352 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01486 05 24104973 24110485 Aip05g01486 05 24104973 24110485 ECH