Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01447 ATGAAGAGGAACAGAAGCTTCTGTCAACTATTTTTGCTCTCCTTTTTGGTGATTGTGATGACTATTATCACCTTCTCTATAATCTCAGTAGAAGCAAGGAAGAACAATCATCGCCAGAACATGATTAACAAAAGACTCCCCAAACGTCACACAAGAGGGAGAGCCACATCACCATCGCCATCTCCGTCGCCGTCTCCGCCAATGTCCACCAACACTTTTGACATTATGTCCTTTGGCGCAAAGGGCAATGGAATTTCTGATGATTCACAGGCACTTGTAGTTGCATGGAGAAGTGCATGCAAAGTTGGTGGTGCTACAGTTTTAGTTCCATCTAAACTCAAATTCCTTCTAAAACCCCTCACTTTACAAGGCCCTTGTATGCCAGATCTCACTCTTCAGATTGATGGAACTCTAGTGGCTCCAGAAGAGGCATCTTCATGGCCAAAATCAAGTTTATATCAGTGGATAAATTTCAAATGGCTACAAAACTTCACACTCAAAGGATCTGGAACTCTTGATGGCCAAGGCTCTAATTGGTGGACTACTTCCTCCTCTTCAGAACCTTATAATTATGAGACCCAGAAGAGCTACTCTAAACACATTCCATACATGAAGCCAACTGCTGTGAGATTCTATTCTAGCAACCATATAACAGTTCGTGATATCAGAATCCTAAACAGTCCCTTATGCCATCTAAAATTTGATAACTCAAAGGGGATTCAAGTTACCAACATTACAATTTCTTCCCCACAGAATAGCCCTAACACTGATGGAATTCACTTGCAAAACACACACGATGTGCAAATTCAGCACTCTGATATTCAAACTGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAAGGTTCATGTCCACCATATTATGTGTGGCCCAGGCCATGGTATAAGGGTGGGAATGAACCAAACAGAAGCAGTGGTGATTTCAGGTGTTAAGTTCAACCAAATAAGTGGGACTTATGGGGTGCAACCTATCCATCTAGCGTGCAGCAACTCCTTACCGTGCACCGACGTTGACTTAATTGACATTCAACTTAGACCTTCAGTTAAGTACCAAGGTTTATTACAGCAAGCTGTGTGTTGGAACTCTTATGGAACTTCTCAAGGACCTTTGCTACCTTCAAGCATTGATTATTGCTTAAGAAGTGGTGGGGGATCAATCAAGAGGATAGCAAGGTCACATGATACTTTATGTTACTAA 1221 0.421 MKRNRSFCQLFLLSFLVIVMTIITFSIISVEARKNNHRQNMINKRLPKRHTRGRATSPSPSPSPSPPMSTNTFDIMSFGAKGNGISDDSQALVVAWRSACKVGGATVLVPSKLKFLLKPLTLQGPCMPDLTLQIDGTLVAPEEASSWPKSSLYQWINFKWLQNFTLKGSGTLDGQGSNWWTTSSSSEPYNYETQKSYSKHIPYMKPTAVRFYSSNHITVRDIRILNSPLCHLKFDNSKGIQVTNITISSPQNSPNTDGIHLQNTHDVQIQHSDIQTGDDCVSIQTGCSKVHVHHIMCGPGHGIRVGMNQTEAVVISGVKFNQISGTYGVQPIHLACSNSLPCTDVDLIDIQLRPSVKYQGLLQQAVCWNSYGTSQGPLLPSSIDYCLRSGGGSIKRIARSHDTLCY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01447 406 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 20 306 - -
Aip05g01447 406 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 307 394 - -
Aip05g01447 406 PANTHER - 20 306 - -
Aip05g01447 406 Pfam Glycosyl hydrolases family 28 105 306 IPR000743 GO:0004650|GO:0005975
Aip05g01447 406 PANTHER - 307 394 - -
Aip05g01447 406 Gene3D - 57 384 IPR012334 -
Aip05g01447 406 SUPERFAMILY Pectin lyase-like 62 383 IPR011050 -
Aip05g01447 406 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01447 Aip-Chr5 22618519 22621488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01447 1 405 Glycoside Hydrolase AT3G26610 45.756 1.48e-133 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01447 K01213 - mnt:21410340 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01447 05 22618519 22621488 Aip05g01447 05 22618519 22621488 ECH