Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01402 ATGGCAGCGTCTCTGGGAGTGTTTTCCGGAATGAGCTTCGTGGCGGCCGAGGCGCCCTCAGGAAGCCTCTTCAGGTCTGTGGCTGTGGCTGTTCATGTCCCGCCGAAGGGGGGAAGGGTGCTGGGGGCTGTGCGAGCGGTGACGTCGGCGACGGTGTCGGAGACTCCTTCGAGCCCTAAGGTAAGGGGCATAATGAAGCCCCGCAAAATCTCTCCGGAGATGCAAGCCATCTGCGGCGTCTCCGAGATTTCTCGAACCCAGGCTCTCAAGCAGATTTGGGCCTACATCAAGGAAAACAATCTTCAGGATCCTGAAAACAAGAAGATCATAATTTGTGATGAAAAGCTGAAGAAGATATTTGCTGAGAGAGATCAAGTTGGCATGCTTGAGATTGCTGGATTAATTAGCCCACACTTTCTTAAATGA 426 0.5282 MAASLGVFSGMSFVAAEAPSGSLFRSVAVAVHVPPKGGRVLGAVRAVTSATVSETPSSPKVRGIMKPRKISPEMQAICGVSEISRTQALKQIWAYIKENNLQDPENKKIIICDEKLKKIFAERDQVGMLEIAGLISPHFLK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01402 141 Pfam SWIB/MDM2 domain 66 139 IPR003121 -
Aip05g01402 141 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 12 140 - -
Aip05g01402 141 CDD SWIB-MDM2_like 68 139 - -
Aip05g01402 141 SUPERFAMILY SWIB/MDM2 domain 58 141 IPR036885 -
Aip05g01402 141 SMART swib_2 64 141 IPR019835 -
Aip05g01402 141 PANTHER EXPRESSED PROTEIN-RELATED 12 140 - -
Aip05g01402 141 Gene3D SWIB/MDM2 domain 58 141 IPR036885 -
Aip05g01402 141 ProSiteProfiles SWIB/MDM2 domain profile. 63 141 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01402 Aip-Chr5 21166082 21167859 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aip05g01402 SWIB 3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01402 - - lja:Lj1g3v0050930.1 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01402 05 21166082 21167859 Aip05g01402 05 21166082 21167859 ECH