Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01397 ATGGGAATTCGATCGGTATTCGATGCGGGTGAGATGCGAAGAGAATTGGAGAAATGCGGTGTTGATCCTCACAAGTTCCTTCCTCTTGTTTGGAAGCACGTCATCCTCAAATCTAATCACCACTCCGATTGGGACTGGGAGAACCACGCCCCTTCTCTTCCCTCCCCGGCTTACTCTCTTCTCCGCTCCATCCCCCCTCTCTCTTCCTCCCTCCACTCCGTCTTCCACTCCAACGATAACCTCACCTCCAAGCTCCTCATCAAGCTCCATAATGGCGCTTTTGTGGAGGCTGTGATCATGAGGTATGACACTCGTTTGGGAAAATACGCCGGTAAACCCCGTCCCGGTGGTCTACGAGCAACTTTGTGCATATCATCTCAGGTTGGTTGTAAAATGGGTTGCAAGTTCTGTGCAACTGGAACCATGGGATTCAAAAGTAGCTTAACATCTGGAGAAATAGTCGAGCAATTGGTCCACGCCTCTAGGTTTTCACAAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTCTAAACAACTATTCTGCTGTGGTAGAATCCATTCGTGTCATGACTGGATTGCCGTTTCAATTGTCATTGAAAAGGATTACTGTCTCAACGGTTGGCATCATTCATGCTATCAACAAACTTCATAATGATCTGCCTGGTTTGAACTTGGCAGTCTCACTGCACGCACCAGCACAAGATATCAGATGCCAGATAATGCCTGCTGCTCGTGCTTTTCCTTTGCAAAAACTGATGGCTTCACTGCAAGAATATCAAAGAAACAGTCAGCAGAAGATATTGATCGAGTACATAATGCTTGATGGGGTCAATGATGAAGAGCAGCATGCCCACCAATTGGGAAAACTGCTAGAAACATTTCAAGTGGTAGTGAACTTAATACCTTTCAACTCTATTGGTATGTTGAGTCAATTCAAACCAACTACTGAGCAGAAAGTTTCGGCATTTCAGAAAATTCTTAGAGGTACGTACAATATCCGAACAACAATTCGGAAGCAGATGGGTCAGGACATAAGTGGTGCATGTGGACAATTGGTGGTTAATGTACCTGATAAGTCTCTCGGAAATGCCGAACCCCTAACAGACATAGAAGATCTTTTCATTTGA 1131 0.4527 MGIRSVFDAGEMRRELEKCGVDPHKFLPLVWKHVILKSNHHSDWDWENHAPSLPSPAYSLLRSIPPLSSSLHSVFHSNDNLTSKLLIKLHNGAFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGTMGFKSSLTSGEIVEQLVHASRFSQIRNVVFMGMGEPLNNYSAVVESIRVMTGLPFQLSLKRITVSTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLQKLMASLQEYQRNSQQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNSIGMLSQFKPTTEQKVSAFQKILRGTYNIRTTIRKQMGQDISGACGQLVVNVPDKSLGNAEPLTDIEDLFI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01397 376 ProSiteProfiles Radical SAM core domain profile. 116 345 IPR007197 GO:0003824|GO:0051536
Aip05g01397 376 Pfam Radical SAM superfamily 125 283 IPR007197 GO:0003824|GO:0051536
Aip05g01397 376 CDD Radical_SAM 129 321 - -
Aip05g01397 376 Pfam 4Fe-4S single cluster domain 129 213 - -
Aip05g01397 376 SFLD adenosine C2 methyltransferase (RlmN-like) 75 360 IPR004383 GO:0006364|GO:0008173
Aip05g01397 376 SUPERFAMILY Radical SAM enzymes 121 295 - -
Aip05g01397 376 SFLD Radical SAM 75 360 IPR007197 GO:0003824|GO:0051536
Aip05g01397 376 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 366 - -
Aip05g01397 376 PANTHER 23S RRNA METHYLTRANSFERASE 3 366 IPR040072 -
Aip05g01397 376 Gene3D Aldolase class I 70 361 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01397 Aip-Chr5 21062746 21065314 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01397 - - ccaj:109814608 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01397 05 21062746 21065314 Aip05g01397 05 21062746 21065314 ECH