Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01396 ATGGCGACGGCGACGGCGACGGAGGGAACCGAAACCAACGACGACGGTGCTCGTCCATGGCAATCCTACCACACTGTTTATACAACTGCCAAAGCAGGAATGGATGGTGTGGACAAGGAGAAAGTACAAAGGACAGTGTATGAAATGAGCAAAGGATCTAAGTATTTTCAGAACGAGGAACGCAAGGACGCTTTTATTACCCAGAAGATCGACAAAATCCGAACTCAATGTGATAAGCTTACCCAAGCAGACCTATCCCATTTTCAGAAGGTAGCTGACCGAAGAATACTTGAGCTAGAAGCTTTGCGGGATCTTTCAAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAAGTAACCCTACATTAAAGGGCAAGCCAATGGCTGTTGGTAGCATGTCTATGATATCCACTGCCAATTATGAGGCTAGGAAATTTGGGGTTCGTGCTGCTATGCCTGGGTTCATTGCACGTAAACTTTGTCCAGAATTAATATTTGTCCCCACAGATTTCAAGAAGTATACCCATTACAGTGATTTGACCAGAACAGTTTTTCGGAGGTATGATCCCAATTTTATGGCTGCTAGCCTTGATGAAGCATACCTTGATATAACTGAAGTATGCAAAAGAAGGAACATCAAAAGTGAAGAAATTGCGGAAGAACTCCGCACTAGTGTTTATGAAGAGACCGGTCTCACATGTAGTGCAGGAGTGGCACCAAATCGCCTACTTGCCAAGGTTTGCTCAGATATTAACAAGCCAAATGGACAGTATGTCTTACCAAATGATCGTATGGCTGTTATGACCTTCATATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACCGAACATATTCTGAAGGCTGTATTTGGAATTAACACGTGTGAACAGATGCTGGAGAAGGCTAGCTACCTCTGTGCTCTTTTCTCTCAGTCAACAGCAGACCCAAATTATGTTAGCCTAACAATATATCAGCTATTGAGTTATGCAAAGCTTGTGTTTGCAGCGGAGCTTGCTGAAATGCTGTCCACAGACATGCAAAAAGAGGGTCTCTGTGGGCGAACATTGACTCTTAAACTGAAAACTTCTTCCTTCGAGGTTCGGACTAGAGCCATGACTTTACGAAAGTACATAAGCTCGAGGGAGGATATCTTGAAGCATGCTTCGGAGCTTCTAAAAGCAGAACTTCCTCTTTCAGTAAGATTGATAGGCCTTAGGATGTCACATTTTGATGGAGACAAGTATGGTGGCTCAACATCTAATCCGAAACAAAAGACTATCACCGACTTCATTACTTCTGTAGATGCCGATAGGAACCGTTTTTTGCCAGATGTTGCAGATCATGATTTTGTCAGCCATACAGAGACTGATGTTTCCATTGGCAGTTGCCAAAGAAGCAGAGATCCTGTTGATGGGAATCATTCATCTGATGTAAACTGCCAAAGTGGCACTGGCTGGAGTTCAGAGGAGATACAAACATCTGGCAACAATGCTTCATGTTCTAACTATGGCCAAGTTAAAGAAGCGGTGGAATCAACTTTTCCAATTCAGGGACAGTTTGAAGACACTAGTACACTAAATTTGTCTAATCTCCTGGAGGATGAGCGACTTAATTCTTGCGAGGATAAGACAATGTTGTGGTTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTGCCTCCAAGTTTTGTTGAGGACAGATTAGAGCACTCTGATTTTCATCTTGCCGAAAAGCTTCAAAAGGAAGAATCTCGGATTCACCAAAGAACATCTGTTTCAGGTCAAAGCTGGGATCAGAAGAACAGAATCACTAGAGAAAGCATATCTAAGAAGCAAAAATTGTCTCAGAAAGAAGGCAGTTACAGACCCATTGATTATTTCTTTTTGTTAAAGAGCAATAAAAACCGTCCCAGTTAG 1950 0.4246 MATATATEGTETNDDGARPWQSYHTVYTTAKAGMDGVDKEKVQRTVYEMSKGSKYFQNEERKDAFITQKIDKIRTQCDKLTQADLSHFQKVADRRILELEALRDLSRIWLHVDMDAFYAAVETLSNPTLKGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTHYSDLTRTVFRRYDPNFMAASLDEAYLDITEVCKRRNIKSEEIAEELRTSVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILKAVFGINTCEQMLEKASYLCALFSQSTADPNYVSLTIYQLLSYAKLVFAAELAEMLSTDMQKEGLCGRTLTLKLKTSSFEVRTRAMTLRKYISSREDILKHASELLKAELPLSVRLIGLRMSHFDGDKYGGSTSNPKQKTITDFITSVDADRNRFLPDVADHDFVSHTETDVSIGSCQRSRDPVDGNHSSDVNCQSGTGWSSEEIQTSGNNASCSNYGQVKEAVESTFPIQGQFEDTSTLNLSNLLEDERLNSCEDKTMLWLNDYKCSLCGIELPPSFVEDRLEHSDFHLAEKLQKEESRIHQRTSVSGQSWDQKNRITRESISKKQKLSQKEGSYRPIDYFFLLKSNKNRPS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01396 649 Pfam impB/mucB/samB family 112 256 IPR001126 GO:0006281
Aip05g01396 649 ProSiteProfiles Zinc finger UBZ3-type profile. 556 593 IPR041298 -
Aip05g01396 649 Pfam Ubiquitin-Binding Zinc Finger 560 593 IPR041298 -
Aip05g01396 649 ProSiteProfiles UmuC domain profile. 109 289 IPR001126 GO:0006281
Aip05g01396 649 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 345 418 IPR036775 GO:0003684|GO:0006281
Aip05g01396 649 MobiDBLite consensus disorder prediction 471 498 - -
Aip05g01396 649 Pfam impB/mucB/samB family C-terminal domain 346 423 IPR017961 GO:0003684|GO:0006281
Aip05g01396 649 Gene3D - 339 425 IPR036775 GO:0003684|GO:0006281
Aip05g01396 649 Gene3D - 265 333 - -
Aip05g01396 649 PIRSF DNA_pol_eta 102 224 - -
Aip05g01396 649 PIRSF DNA_pol_eta 13 90 - -
Aip05g01396 649 PIRSF DNA_pol_eta 433 643 - -
Aip05g01396 649 PIRSF DNA_pol_eta 219 315 - -
Aip05g01396 649 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 345 621 - -
Aip05g01396 649 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 13 325 - -
Aip05g01396 649 PANTHER DNA POLYMERASE KAPPA 345 621 - -
Aip05g01396 649 PANTHER DNA POLYMERASE KAPPA 13 325 - -
Aip05g01396 649 Gene3D - 126 174 - -
Aip05g01396 649 Gene3D - 114 264 IPR043128 -
Aip05g01396 649 CDD PolY_Pol_IV_kappa 110 420 IPR022880 GO:0003887
Aip05g01396 649 Pfam IMS family HHH motif 272 302 IPR024728 -
Aip05g01396 649 Gene3D - 27 113 - -
Aip05g01396 649 SUPERFAMILY DNA/RNA polymerases 83 324 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01396 Aip-Chr5 21057384 21061371 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01396 K03511 - gmx:100816973 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01396 05 21057384 21061371 Aip05g01396 05 21057384 21061371 ECH