Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01003 ATGCAGAAGAGCGCTTCATCAGGGGTGTCATTGCTGGGCCCAGGAGGCTTAGACCTAACACACTCCTTCTTCACCTCCATACTCAACTCTGCACCACCCTCTCCCACTAAGCGCCACAACAAGGTCACTGTAGTTGGCGCAGGAAACGTCGGAATGGCCGTAGCCCAAACCATCCTCACTCAGGACCTCGTCGACGAACTCGTCCTCATCGATGCCCTCCCCGACAAGCTCCGCGGAGAGATGCTGGACCTGCAGCACGCTGCCGCGTTCCTTCCACGCACCAAGATCCACGCGTCCACGGAGTACTCCGTCACGGCTGGGTCTGACCTGTGCATCGTGACGGCAGGGGCACGGCAGGTGAGCGGAGAGTCAAGGCTGAACCTGGTGCAGAGGAACGTGTCCCTGTTCAGAAGCATCATTCCCCCTCTGGTTCAGCACTCGCCGGCATGTGTTATTCTTGTGGTTTCGAATCCGGTGGACGTGCTAACATATGTTGCCTGGAAGCTGTCAGGGTTTCCGGCGAACCGCGTCATCGGCTCCGGCACCAACCTGGACTCTTCCCGTTTCCGTTTCCTGATTGCCGATCATCTTGACGTCAACGCTCACGACGTTCAGGCATACATTGTAGGGGAACACGGCGACAGCTCGGTGGCCCTGTGGTCAAGCATCAGCGTGGGCGAAGTTCCGGTGCTAAGCTTTCTTGAGAAACAAGAGATAGCGTACGAGAAAGTGACGCTGGAGAAGATACACAAGGCAGTGATAGGGAGCGCCGATGAAGTGATCCGTCTGAAAGGGTACACATCGTGGGCCATAGGGTACTCTGTGGCTAACTTGGCTCGAAGCATTCTGAGGGACCAGAGGAAGGTGCACCCCGTTTCGGTTCTTGCAAAGGGGTTTCATGGTATCCATGGAGGGGAAGTGTTTCTGAGCTTGCCGTCGCAGCTTGGTAGGGGAGGGGTCATTGGTGTTACCAACATCCATCTGACTCCCAAAGAGGCACAACACCTCAGAGACTCTGCCACCGCCATCCTTGAGGTCCAAAATCAACTTCCAATTTGA 1059 0.5619 MQKSASSGVSLLGPGGLDLTHSFFTSILNSAPPSPTKRHNKVTVVGAGNVGMAVAQTILTQDLVDELVLIDALPDKLRGEMLDLQHAAAFLPRTKIHASTEYSVTAGSDLCIVTAGARQVSGESRLNLVQRNVSLFRSIIPPLVQHSPACVILVVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAHDVQAYIVGEHGDSSVALWSSISVGEVPVLSFLEKQEIAYEKVTLEKIHKAVIGSADEVIRLKGYTSWAIGYSVANLARSILRDQRKVHPVSVLAKGFHGIHGGEVFLSLPSQLGRGGVIGVTNIHLTPKEAQHLRDSATAILEVQNQLPI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01003 352 Hamap L-lactate dehydrogenase [ldh]. 39 351 IPR011304 GO:0004459|GO:0005737
Aip05g01003 352 Pfam lactate/malate dehydrogenase, NAD binding domain 41 179 IPR001236 GO:0016491
Aip05g01003 352 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 352 - -
Aip05g01003 352 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 44 343 IPR011304 GO:0004459|GO:0005737
Aip05g01003 352 CDD LDH_1 37 349 - -
Aip05g01003 352 SUPERFAMILY LDH C-terminal domain-like 180 350 IPR015955 GO:0003824|GO:0016616
Aip05g01003 352 PANTHER L-LACTATE DEHYDROGENASE 1 352 - -
Aip05g01003 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 343 IPR022383 GO:0016616
Aip05g01003 352 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Aip05g01003 352 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Aip05g01003 352 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Aip05g01003 352 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Aip05g01003 352 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Aip05g01003 352 Gene3D - 22 181 - -
Aip05g01003 352 Gene3D - 182 350 IPR015955 GO:0003824|GO:0016616
Aip05g01003 352 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Aip05g01003 352 PIRSF Lac_mal_DH 36 351 IPR001557 GO:0016616|GO:0019752
Aip05g01003 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 179 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01003 Aip-Chr5 14291908 14292966 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01003 K00016 - pvy:116120465 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01003 05 14291908 14292966 Aip01g01447 01 46027903 46030012 PCT