Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00976 ATGAATGATACTAATCTGTCCAACCAAAACAAAGTAAAAATGTCAGCAGCAAAATCTGAGTTGGTAGAGAAGGCAAGCATAAACGTAGAAAGTAATGACCAATCATCTTCACCTGCTCCTGCAAGCCTTGGGAAGATGGTGGCTTCAGAGCTGAGAATTCAACGAGGAATAGCCCTTCCAATGGTGGCCATGAACCTTGCCTGGTTTGCCAAGACAGCCATCACAACAGCATTTCTAGGCCGCCTGGGCGAGCTCAGCTTAGCCGGCGGTGCACTGGGCTTCACTTTCGCCAACGTAACCGGCTTCTCCGTCCTGAACGGCCTGTGCGGCGCCATGGAACCCATCTGTGGACAAGCTCACGGTGCTAGAAACTTCAAACTCCTCCACAAGACCCTTCTCATGACAATCATATTGCTCCTCTTGGTAACAATTCCCATCACTTTCCTATGGCTCAACGTTGACAAAATCTTAATTCACTTCGGGCAGCACCAAGATATTTCAACGGTGGCCAAAACCTACATCTCATATCTTATACCAGATTTGTTTGTGACCTCGCTCTTCTGCCCCTTAAAATCCTACTTGAGCTCCCAAAGCATAACACTCCCAACCATGTTCAGTTCAGCCGTGGCACTTGCTTTCCACATACCAATCAACATAGTACTCTCAAAAACCATGGGCCTTGGGGGGGTTTCCATGGCTGTTTGGATAACCGATCTTATAGTGGTGGTTCTGCTGGCAATTTACGTAGCCATTCTTGAGAACAGAAAGGCAAGCATGTGGAAGGAAGGGGGGTGGTGGGATCAGAGCATACAAGATTGGATTAGGCTTTTGAAGCTGTGCGGATCATGCTGCCTCAACACATGCTTGGAATGGTGGTGCTATGAGATTCTCATCTTGCTCACTGGCCACCTCACTGACGCTAAGGACTCACTCGGAGTTCTCACCATTGTTCTCAACTTCGACTATCTGCTTTTCTCCGTCATGCTGTCCCTGGCCACCTGTGTCTCCACCCGAGTCTCCAACGAGCTCGGGGCCAACCATGCCGCCCCCGCGTACCGGGCGGCGTGTGTTTCTTTGGGATTGGGGTGTGCCTGCGGGTGCATAGGGAGCTTGGTGATGGTGGGGGCAAGGGGAGCCTGGGGGCCTCTGTTTAGCCATGAAAGGGGAATCATAACAGGGGTAAAAAGGACAATGCTGCTGATGGCTCTTGTGGAAGTGTTTAATTTTCCGGTGGCGGTTTGTGGAGGCATACTTAGAGGGACAGCTAGACCGTGGTTGGGCATGTATGCTAATTTGGGTGGATTTTACTTCCTTACCCTGCCCCTTGGTGTGCTTTTTGCATTCAAGCTTCACCTTGGGCTTATTGGGCTCTTTATTGGTCTTATTGCCGGTATTGTTATTTGCTTGTTGCTGCTGCTCGTGTTTATTGCAAGGATTAACTGGGAAGTGGAAGCTTCTAAGGCACAGCAACTGGCCACAAAATATGATTCTCAGGAACCAATTCAAAACCATCATGTCTAA 1521 0.4931 MNDTNLSNQNKVKMSAAKSELVEKASINVESNDQSSSPAPASLGKMVASELRIQRGIALPMVAMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSVLNGLCGAMEPICGQAHGARNFKLLHKTLLMTIILLLLVTIPITFLWLNVDKILIHFGQHQDISTVAKTYISYLIPDLFVTSLFCPLKSYLSSQSITLPTMFSSAVALAFHIPINIVLSKTMGLGGVSMAVWITDLIVVVLLAIYVAILENRKASMWKEGGWWDQSIQDWIRLLKLCGSCCLNTCLEWWCYEILILLTGHLTDAKDSLGVLTIVLNFDYLLFSVMLSLATCVSTRVSNELGANHAAPAYRAACVSLGLGCACGCIGSLVMVGARGAWGPLFSHERGIITGVKRTMLLMALVEVFNFPVAVCGGILRGTARPWLGMYANLGGFYFLTLPLGVLFAFKLHLGLIGLFIGLIAGIVICLLLLLVFIARINWEVEASKAQQLATKYDSQEPIQNHHV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00976 506 TIGRFAM matE: MATE efflux family protein 60 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip05g00976 506 PANTHER PROTEIN DETOXIFICATION 56 39 494 - -
Aip05g00976 506 PANTHER MULTIDRUG RESISTANCE PROTEIN 39 494 - -
Aip05g00976 506 Pfam MatE 60 219 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip05g00976 506 Pfam MatE 283 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip05g00976 506 CDD MATE_eukaryotic 50 487 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00976 Aip-Chr5 13701890 13704336 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00976 K03327 - gmx:100804083 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00976 05 13701890 13704336 Aip05g00976 05 13701890 13704336 ECH