Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00941 ATGGCTAAGAATGTGGGCATTCTCGCCATGGACATCTACTTCCCTCCCACCTGCGTTCAACAGGAAGCGTTGGAGGCTCATGATGGTGCCAGTAAAGGCAAATACACCATTGGACTTGGTCAAGATTGCATGGCATTCTGCACCGAGGTTGAAGATGTCATCTCCATGAGTTTGACAGTTGTTACTTCTCTTCTTGACAAGTATGGGATTGATCCTAAACAAATTGGGCGCCTCGAAGTTGGCAGTGAGACCGTCATAGACAAGAGCAAATCCATCAAGACTTTTCTTATGCAGATTTTTGAGAAACATGGAAATACTGACATAGAAGGGGTTGATTCAAGTAACGCATGCTATGGAGGAACTGCTGCCTTGTTCAATTGTGTCAACTGGGTGGAGAGCAATTCGTGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCCGAAGGACCTGCTCGGCCTACTGGAGGAGCTGCTGCTATTGCCATGCTTGTTGGTCCTGATGCTCCCATTGCATTTGAAAGCAAATTGAGGGCAAGCCACATGTCTCATGCTTATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAACTTTCTCAAACTTGCTACCTTATGGCTCTTGATTCATGCTATAAACAACTCAGTCACAAATATGAGAAGCTCAATGGGAAGCCATTTTCTCTTTCCGATGCTGAATACTTTGTATTTCACTCACCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGTTGTTTGATGACTTCATAAAGGATCCAAGTTCTGTGGATGAAGCTGCCCAGCAAAAACTGGAACCTTTTGCAAATTTATCCGGTGATGAGAGCTACCAAAGCCGGGATCTCGAAAAGGCTTCCCAGCAAGTTGCAAAGCCTCTATTTGATGCCAAGGTGCAACCAACTACTTTGATACCAAAGGAAGTTGGCAACATGTACACCGCATCTATATATGCAGCATTTGCATCCCTTATTCATAACAGATATAGCGTGTTGGCTGGTAAGAGGGTGATATTATTTTCCTATGGGAGTGGCCTAACCGCCACAATGTTTTCTTTGCAATTACGTGATGCTCAGCATCCATTTAGCTTATCAAACATTGCTGAAGTAATGGATGTTGCTGGAAAATTGAAGTCAAGGCATGAGTTTCTTCCAGAGAAATTCGTGGAAACTCTGAAGCTAAATGAACATAGATATGGTGCTAAGGAGTATGTCACAAGCAAGGACACAAGCCTATTATCTCCAGGGACATTCTATCTCACTGAAGTGGATTCCATGTATCGCAGATTCTATGCAAAGAAAGCTATTGAAAATGGTTTTGCTCCCGCATCGAACGGCGTCATTGCCAATGGTCATTGA 1404 0.433 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVTSLLDKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSSNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRASHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKQLSHKYEKLNGKPFSLSDAEYFVFHSPYNKLVQKSFARLLFDDFIKDPSSVDEAAQQKLEPFANLSGDESYQSRDLEKASQQVAKPLFDAKVQPTTLIPKEVGNMYTASIYAAFASLIHNRYSVLAGKRVILFSYGSGLTATMFSLQLRDAQHPFSLSNIAEVMDVAGKLKSRHEFLPEKFVETLKLNEHRYGAKEYVTSKDTSLLSPGTFYLTEVDSMYRRFYAKKAIENGFAPASNGVIANGH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00941 467 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Aip05g00941 467 Gene3D - 1 450 IPR016039 GO:0016746
Aip05g00941 467 CDD init_cond_enzymes 4 368 - -
Aip05g00941 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Aip05g00941 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Aip05g00941 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Aip05g00941 467 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Aip05g00941 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Aip05g00941 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00941 Aip-Chr5 13123926 13127854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00941 K01641 - gmx:100782595 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00941 05 13123926 13127854 Aip05g00941 05 13123926 13127854 ECH