Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00938 ATGGATGATAATCTCTTCAATGACCAAGTGGTGCCATCTGGTCGCATAACAGGAATAAAGTTTGGCCTTTTAACTGAGGAAGATATAGAGAATGCCTCTACTTTGGAAATACAAGCAGCCGGGCAGGTTAACTGTTCTGATTTGGGACTTCCAAACCCAACTCATGAGTGCACCACTTGTGGTTCTAAAGATAGAAATTTCTGTGAAGGCCATTATGGGGTAATTAAATTTAACATTACCATACCCCATCCTTATTTCCTATCGGAGATTGCACAACTTTTGAACAAAATCTGCCCTGCTTGTAAATCTATTCGAGAAGAATTACGGAGCAAGGGTGCTCAATTACTCTTTGGAACCAAACGGTCTAATGGTTGTAAATATTGTTCTGGAAATAGTTATCCAAAAATGAAATTCAGAGTTTCGTCCAATGATCTCTTCCGAAGAACTGCGATTATTGTTGAAATAAATGAGAGGTCTTTAAACTCAAAGAAACATTTGGGACGAAGAGTACCTGAACATTTTTGGGATTTCATCCCCTCAGATCCTCAGCAAGAAGAAAGTTGCATAAAACCAAACAGAAGGGCTTTATCCCCTTATCAGGTTCTTTGTTTGCTGAGCGATGTTGATCAAGACTTTGTTCAAAAATTTGTTCCACAGACGGAGTTACTTGGTCTTAATTGCTTCCCGGTGACGCCAAATTGTCATCGCGTGACAGAAGTCATGCATGCATTTTCTAATGCAAACCGATTGAGTTTTGACAACAGGACCAGAGCTTGTAAGAAATTGGTTGATTTCCGGGGTACAGCTACTGAGTTAATTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGGCAAGATTTTCAACCTTTACTTTTCTACATCCTGATAAAACACCAGCAAATAGTTTTGCTGATATCCAGCAAAAGAAAAATGCTGAAAATGCGTGCAATTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGAAAACGTAATGATAGTTCATTCCGTACGGTAGTAGTTGGTGATCCAGACCTTGAGCCTGGTGAAATTGGTATACCTTGTCAAATCGCTGAAAGTCTGCAGGTTTCCGAGTATGTGAACAAGCATAATTTGGAAAAAGTGCTTTATTGTGGCGAGTTACGCATGATAGAGAAGGGAAACATAAAGGTCCGCAGAAAAGGTAGTCCTATTGTCCTGTACAAAAAAGAAGAGCTTCAAATAGGAGACTTGTTTTATCGGCCACTTGGTGATGGTGATAAAGTATTGATAAATAGGCCACCTTCCATACATCAACACTCAATGATTGCTCTCTCGGTTAAAGTCCTACCAATATCTTCTGCGGTGTCTATCAACCCACTTTGTTGTTCCCCACTCCGTGGGGATTTTGACGGTGATTGTCTTCATGGGTATATTCCACATTCAGTTGCTGCAAGAGTTGAGCTAAGTGAGCTGGTTTCTTTGGAGAAGCAATTGATAAATGGGCAGAGTGGTAAAAATCTGCTTTCACTCTCTCAGGATAGCTTGACGGCTGCCCATTTGCTGATGGAAGATGGGGTCCTTTTGAATGTTTACCAAATGCAGCAGCTTCAGATGTTTTGTGCTCATAATTTAACGCCACCTGCTATTGTTAAAGCTCCTTCCAGTAATACCTCATTTTGGACTGGCAAGCAATTATTCAGCATGCTGTTGCCTTCTAATCTTGACTATTCTTTTCCTTCAAATGGTGTTTCTATCAGAAATGGCGAGCTTATATCTTCTTCAGAGGCTTCTGGTTGGTTACGTGATTCTGACTGTAATCTTTTCCAGAGTCTTGTTGAACAATGTCAAGGGGACACTCTAGACTTTTTATATGCTGCACAGAAAGTTCTTTGTGAGTGGTTATCTATGACAGGTTTCACAGTTTCACTTGCTGACCTGTACCTTGCTTCTGACTCCTACGCACGGAAAAATATGATGGAGGAAATCTCCTTTGGCTTACAAGAAGCAGAACATTCGTGTAACTTCAAACAGTTGTTGGTAGATTCCTGTTGTGATTTTCTTGCAGGTAATGTTAAAGGAAATGAAAAGACTATGATTGATGTGGTTCGTATGAACTATGAAAGGCAAATATCAGCTGCTCTCAGTCAAGAGTCGGTTGATGCTTTTAGACAAGTTTTTCGTAATATTCAAGGTCTAGCTGACAGATATGGACATAAGGACAATTCATTCCTTGCTATGATCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTGCAACATTCCATGTGCCTTGGCCTACAACATTCTTTGGTACGTTTATCATTCAGAATTCCCCATCAACTCTCATGTGCTGCTTGGAATAGTGAAAAGGGGCTTGATTCTGTCCAAAAGTTTTCTAGTACTCCTAAATCTGTTCAGTCTTATATCCCATATGCTGTGGTTGAAGGATCGTTCCTGTCTGGGTTGAATCCACTTGAATGTTTTGTTCATTCGGTCACAAATCGTGATAGCTCTTTCAGTGACAATGCTGACCTCCCTGGAACATTATCTCGTAGACTAATGTTCTTCATGCGGGATATTTATGGCGCATATGATGGAACGATTAGGAATTTGTACGGTAATCAGATTGTACAGTTTTATTATGATACTGATGAGGATTCGCCTATGGGTAGCTGCTCCCAAGAGACTACTATAGGTGGTGAACCAGTTGGAGCGCTTGCTGCTTGTGCGATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAATAAGTCTTCTTGAAACATCACCTCTGTTGAATTTAAAGAGTGTTCTGGAGTGTGGTTCCAAGAAAAAAAGTGGTGACCAGACTGTCTCTTTATTTTTGTCTGCGAAATTTCGTGACCGGAGATATGGGTTTGAGTATGCAGCATTTGATGTTAAGAATTATTTGGAAAGAATAATGTTCTCAGATATTGTTTCTACTGTCATGATAATTTACACTTCACAGTCTAGAAACCAAGAAAAGTACAGCCCTTGGGTTTGCCATTTTCATCTAGACAAGGAAATTGTTCGCAGAAGAAACCTGAAATTGTGTTCTATCATTAACTCTCTTAAGAAGAGATGTGGGATTCTAAGGAAAGAATCCAAAGTATGTTTTGCCAGCATGGAAATATCACTCAAGAAGTGTTCAGCTGCATACATGTCTCAGGAAGGAAAAATTACTTCTACAGATAAGGGAATGGAGGGTGATGATTGCATCACTGTCACCCTTGTTGAATACTTAAACAATTCCATACCACTTGATGATGTTCGGGACTTTATGCTACCTTCCCTTCTTGGAACTACTGTAAAAGGATTTCCGGAGATCACGAAGGTTGATATTCTGTGGAATAGTCTTCCGAAATCAGCAAATTCCAGAATTGGCTGTTCTGGGGAACTTTACTTGAGGATTACTATGTCAAGTGATAATAGCAGTGGAAGATTCTGGGGTGTTCTTATAAATCATTGTCTACCGATAATGCATATGATTGATTGGACAAGAAGTCTCCCAGATAACATAAATCATTTCTGCTCAGCCTATGGAATTGATGCAGGATGGAAATATTTTCTCCAGAATTTGGCATCTGCAACAACAGATACTGGCAAGACAGTCCTTCACAAGCATTTGCGTCTTGTTGCTGATAGCTTGTCAGTTAGTGGAGAGTTTGTAGGGTTAAATGGAAAGGGCATGGCACGACAGAGACAACATGCATCTGTTTCATCTCCCTTTGTACAAGCATGCTTTTCTAACCCTGGTAGTTGCTTTATAAAATCTGCTAAGGCTGGAGTCAAAGATGATTTGCAAGGCATCCTCGACGCATTGGCATGGGGAAACTGTCCACCCTTAGGGACAAGTGGACAATTTGAGATTATATATTCTCCGAAGGGACAAGAGCTTGCTAAATCTGGAGATGTTTATAACCTGCTAAAGGCCAACTTTGACCAGCAGAGTGAAAAGAGCAGTCTCCCTACTGATTACAAATATTCACCTGAGAAATGGAGTTCTAATGTTCGGCCCAAAAATGGTGGGTTTGGCTTCAAAGTGCACAAACAGTTGAAAAGCCTTATTAGAAATTTTGTGACTGTGAACGATATTTACAAACTGACTTCTGCATCAAGGAACATACTGAACAAGTATTCAATTGATGAGCAACTGAATGAGAAGGACCTATTTACCATGCTGAAGGTTCTGCATTTTCATCCGCATAGAGATGAAAAGTATGGCTCTGGACCACAGCACATCAAGGTTGGATGGCACCCTGAACATAAGACTACACGCTGCTTTTTCATAGAACGAACTGATGGGACTGTGGAGGATTTTTCATACCGGAAATGCATTCTTGGTGCTCTTGAGATTGTTGCCCCAGATAAGGCAAAGACCCAGAAGAAAAAATGGAAGAAAGATGAATAA 4419 0.4039 MDDNLFNDQVVPSGRITGIKFGLLTEEDIENASTLEIQAAGQVNCSDLGLPNPTHECTTCGSKDRNFCEGHYGVIKFNITIPHPYFLSEIAQLLNKICPACKSIREELRSKGAQLLFGTKRSNGCKYCSGNSYPKMKFRVSSNDLFRRTAIIVEINERSLNSKKHLGRRVPEHFWDFIPSDPQQEESCIKPNRRALSPYQVLCLLSDVDQDFVQKFVPQTELLGLNCFPVTPNCHRVTEVMHAFSNANRLSFDNRTRACKKLVDFRGTATELISRVLDCLRISKARFSTFTFLHPDKTPANSFADIQQKKNAENACNSSGLRWMKDVVLGKRNDSSFRTVVVGDPDLEPGEIGIPCQIAESLQVSEYVNKHNLEKVLYCGELRMIEKGNIKVRRKGSPIVLYKKEELQIGDLFYRPLGDGDKVLINRPPSIHQHSMIALSVKVLPISSAVSINPLCCSPLRGDFDGDCLHGYIPHSVAARVELSELVSLEKQLINGQSGKNLLSLSQDSLTAAHLLMEDGVLLNVYQMQQLQMFCAHNLTPPAIVKAPSSNTSFWTGKQLFSMLLPSNLDYSFPSNGVSIRNGELISSSEASGWLRDSDCNLFQSLVEQCQGDTLDFLYAAQKVLCEWLSMTGFTVSLADLYLASDSYARKNMMEEISFGLQEAEHSCNFKQLLVDSCCDFLAGNVKGNEKTMIDVVRMNYERQISAALSQESVDAFRQVFRNIQGLADRYGHKDNSFLAMIKAGSKGNLLKLVQHSMCLGLQHSLVRLSFRIPHQLSCAAWNSEKGLDSVQKFSSTPKSVQSYIPYAVVEGSFLSGLNPLECFVHSVTNRDSSFSDNADLPGTLSRRLMFFMRDIYGAYDGTIRNLYGNQIVQFYYDTDEDSPMGSCSQETTIGGEPVGALAACAISEAAYSALGQPISLLETSPLLNLKSVLECGSKKKSGDQTVSLFLSAKFRDRRYGFEYAAFDVKNYLERIMFSDIVSTVMIIYTSQSRNQEKYSPWVCHFHLDKEIVRRRNLKLCSIINSLKKRCGILRKESKVCFASMEISLKKCSAAYMSQEGKITSTDKGMEGDDCITVTLVEYLNNSIPLDDVRDFMLPSLLGTTVKGFPEITKVDILWNSLPKSANSRIGCSGELYLRITMSSDNSSGRFWGVLINHCLPIMHMIDWTRSLPDNINHFCSAYGIDAGWKYFLQNLASATTDTGKTVLHKHLRLVADSLSVSGEFVGLNGKGMARQRQHASVSSPFVQACFSNPGSCFIKSAKAGVKDDLQGILDALAWGNCPPLGTSGQFEIIYSPKGQELAKSGDVYNLLKANFDQQSEKSSLPTDYKYSPEKWSSNVRPKNGGFGFKVHKQLKSLIRNFVTVNDIYKLTSASRNILNKYSIDEQLNEKDLFTMLKVLHFHPHRDEKYGSGPQHIKVGWHPEHKTTRCFFIERTDGTVEDFSYRKCILGALEIVAPDKAKTQKKKWKKDE 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00938 1472 Gene3D RNA polymerase Rpb1, domain 3 497 643 IPR042102 -
Aip05g00938 1472 CDD RNAP_IV_RPD1_N 24 865 IPR040403 -
Aip05g00938 1472 Gene3D RNA polymerase II, clamp domain 7 117 IPR044893 -
Aip05g00938 1472 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 7 1358 - -
Aip05g00938 1472 Gene3D - 326 496 - -
Aip05g00938 1472 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 12 1296 - -
Aip05g00938 1472 SMART rpolaneu7 221 517 IPR006592 GO:0003677|GO:0003899|GO:0006351
Aip05g00938 1472 Pfam RNA polymerase Rpb1, domain 4 705 782 IPR007083 GO:0003677|GO:0003899|GO:0006351
Aip05g00938 1472 Pfam RNA polymerase Rpb1, domain 3 493 641 IPR007066 GO:0003677|GO:0003899|GO:0006351
Aip05g00938 1472 PANTHER DNA-DIRECTED RNA POLYMERASE 7 1358 IPR045867 GO:0003899|GO:0006351
Aip05g00938 1472 Pfam RNA polymerase Rpb1, domain 2 330 488 IPR000722 GO:0003677|GO:0003899|GO:0006351
Aip05g00938 1472 Pfam Protein of unknown function (DUF3223) 1377 1449 - -
Aip05g00938 1472 Gene3D - 646 818 IPR038120 -
Aip05g00938 1472 Gene3D - 1360 1451 - -
Aip05g00938 1472 Gene3D RNA polymerase ii 363 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00938 Aip-Chr5 13073421 13084407 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00938 K16250 - gmx:100796185 2046.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00938 05 13073421 13084407 Aip05g00938 05 13073421 13084407 ECH