Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00897 ATGTCGTCCAGCGGATCCGGATCCGCCCCCAACGGCGAAGCCACTCCGCCGTCGCAACGCAAGGTGGCTCTGATAACCGGAATCACGGGTCAGGACGGTTCCTACCTGACGGAATTCTTGATGGAGAAGGGTTACGAGGTGCACGGCCTCATCCGCCGTTCCTCCAACTTCAACACGCAGCGGATCGAGCACATATACGTGGACCCACACAACGCCCACAAGGCACGCATGAAGCTCCACTACGCCGACCTCTCCGACGCCTCCTCCCTCCGCCGTTGGCTCGACACCATCCTCCCCGACGAGGTCTACAACCTCGCCGCCCAGTCCCACGTCGCCGTCTCCTTCGAGATCCCCGACTACACCGCCGACGTCGTCGCCACCGGGGCCCTCCGCCTTCTGGAGGCCGTGCGCTCCCACATCTCCGCCACTGGGCGCTCGCACATCCGGTATTACCAGGCGGGATCCTCGGAGATGTTCGGGTCCACACCACCCCCTCAGGACGAGACCACACCGTTTCACCCGAGATCCCCTTACGCTGCATCCAAGTGCGCGGCGCACTGGTACACCGTCAATTACCGCGAGGCCTACGGGATCTTCGCCTGCAACGGCATCCTCTTCAACCACGAATCTCCTCGCAGAGGTGAGAATTTTGTGACGCGCAAGATTACGCGGGCCGTGGGCCGGATCAAGATCGGGCTTCAGAGAAAGCTCTTCTTGGGGAATCTTCAGGCTTCTAGGGATTGGGGTTTCGCCGGGGATTACGTGGAGGCTATGTGGCTGATGCTGCAGCAGGAGAAGCCCGACGACTATGTGGTGGCCACCGAGGAGTCTCACACCGTCGAAGAGTTCCTGGAGGTGGCGTTCGGTCATGTGGGCCTAAATTGGAGGGACCATGTTGCTATTGACAAGAGGTATTTTAGGCCCACTGAGGTGGATAACCTCAAGGGTGATGCTACAAAGGCCAAGAAGGTGCTTGGGTGGAAGCCCAAGGTGGGCTTTGAGCAGCTCGTCAAGATGATGGTCGATCAGGATGTTGAGTTGGCTAAGAAGGAGAAGGTTCTTGTTGATGCTGGCTACATTGATGCTCAGCAACAACCTTGA 1101 0.5922 MSSSGSGSAPNGEATPPSQRKVALITGITGQDGSYLTEFLMEKGYEVHGLIRRSSNFNTQRIEHIYVDPHNAHKARMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHISATGRSHIRYYQAGSSEMFGSTPPPQDETTPFHPRSPYAASKCAAHWYTVNYREAYGIFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQRKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGHVGLNWRDHVAIDKRYFRPTEVDNLKGDATKAKKVLGWKPKVGFEQLVKMMVDQDVELAKKEKVLVDAGYIDAQQQP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00897 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 346 IPR036291 -
Aip05g00897 366 Hamap GDP-mannose 4,6-dehydratase [gmd]. 21 350 IPR006368 GO:0008446|GO:0019673
Aip05g00897 366 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 15 361 - -
Aip05g00897 366 Gene3D - 24 330 - -
Aip05g00897 366 Gene3D - 214 340 - -
Aip05g00897 366 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 15 361 IPR006368 GO:0008446|GO:0019673
Aip05g00897 366 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 21 347 IPR006368 GO:0008446|GO:0019673
Aip05g00897 366 CDD GDP_MD_SDR_e 22 346 - -
Aip05g00897 366 Pfam GDP-mannose 4,6 dehydratase 24 340 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00897 Aip-Chr5 12411343 12413014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00897 24 206 Miscellaneous Gene Families AT4G12250 28.796 1.30e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00897 K01711 - gmx:100777692 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00897 05 12411343 12413014 Aip05g00897 05 12411343 12413014 ECH