Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00793 ATGTGGCGGTGCGTCGCTCGTCGACTTCGTGTTCCTCCACCCTCCGACGGATCCACACCTAATCACTCTCTTAGATCTCACTTTTCTAGATTCTTCTCTAGCGGAGAGAACTCGTCGTACACGGTGGTGGATCATAAGTATGATGCTGTTGTGGTAGGTGCTGGTGGCGCTGGGTTGAGAGCTGCTATTGGACTTTCCGAGCATGGATTCAACACTGCTTGCATCACCAAGCTCTTCCCAACTCGTTCTCACACTGTTGCAGCTCAGGGCGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGTATACACTCCTGTTCTCGGAAGTTTTTTATATTCATTATATCCTATGAAGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTGAACTTTGGAAAGGGTGGTCAAGCCTACCGATGTGCATGTGCCGCTGATCGAACTGGACATGCTTTGTTGCACACTCTTTATGGCCAGGCTATGAGACATAATACACAGTTTTTTGTGGAGTATTTTGCATTGGACCTTATAATGAATAGTGACGGTGATTGCCAAGGAGTAATTGCCTTGAATTTGGAGGACGGAACATTACATCGGTTTCAAGCTGCTTCAACAATTTTGGCAACAGGGGGTTATGGTAGAGCATATTTTTCCGCAACCTCTGCACATACATGTACTGGAGATGGTAATGCCATGGTTGCACGTGCTGGACTCCCTCTCGAGGATTTGGAGTTTGTGCAGTTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACAGAAGGTTCCCGGGGTGAAGGTGGAATTCTAAGAAATAGTGAAGGTGAGCGATTTATGGAACGATATGCTCCCACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGACCCTTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATATCGGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCCACTGTGCATTATAACATGGGTGGTATACCTACAAACTATCATGGAGAGGTGGTTACCATTAAAGGTGACAACCCAGATGCAGTAGTTCCTGGATTGATGGCTGCTGGAGAAGCAGCTTGTGCGTCGGTGCATGGAGCCAATAGGCTTGGTGCCAATTCGCTTCTGGATATTGTAGTTTTTGGCAGAGCTTGTGCAAATAGGGTTGCAGAAATCCATAGGCCAGGCAAGATTCTTTATCTTGACGCTGGTCAGAAAACAATTGCCTGGCTGGACAAGTTGAGAAATTCAAATGGTTCATTGCCAACAGCGAAAATTAGGTTAAATATGCAACGGATAATGCAAAATAATGCTGCTGTATTCCGTACACAAGACACATTAGCAGAAGGTTGCCAATTAATTGATAAAGCGTGGGAGAGCTTCCATGATGTCAAGTTAGAGGACCGGAGTTTAATTTGGAACTCCGACCTGATTGAGACTATTGAGTTGGAAAACCTTTTGATTAATGCCTGCATCACAATGCACTCAGCTGAAGCCAGGAAAGAAAGCAGAGGAGCTCATGCCCGTGAGGATTTCACGAAAAGAGATGATGAGAACTGGATGAAACACACTTTGGGGTATTGGGAGAAGGAGAAGGTCCGGTTGGACTACAGGCCGGTGCACATGAATACACTAGATGATGAGGTTGAGTCATTCCCTCCCAAAGCTCGTGTGTATTAA 1845 0.4547 MWRCVARRLRVPPPSDGSTPNHSLRSHFSRFFSSGENSSYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGIHSCSRKFFIFIISYEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLIMNSDGDCQGVIALNLEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDNPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGKILYLDAGQKTIAWLDKLRNSNGSLPTAKIRLNMQRIMQNNAAVFRTQDTLAEGCQLIDKAWESFHDVKLEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEKEKVRLDYRPVHMNTLDDEVESFPPKARVY 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00793 614 PIRSF SDHA_APRA_LASPO 37 604 - -
Aip05g00793 614 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 82 91 IPR003952 GO:0016491
Aip05g00793 614 Gene3D - 48 440 IPR036188 -
Aip05g00793 614 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 45 614 IPR011281 GO:0006099|GO:0016627|GO:0050660
Aip05g00793 614 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 614 - -
Aip05g00793 614 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 262 380 IPR027477 -
Aip05g00793 614 Gene3D succinate dehydrogenase protein domain 565 614 - -
Aip05g00793 614 Pfam Fumarate reductase flavoprotein C-term 483 614 IPR015939 GO:0016491
Aip05g00793 614 Gene3D - 454 564 - -
Aip05g00793 614 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 473 614 IPR037099 GO:0016491
Aip05g00793 614 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 286 391 IPR027477 -
Aip05g00793 614 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 48 614 IPR014006 GO:0016627|GO:0022900|GO:0050660
Aip05g00793 614 Pfam FAD binding domain 48 430 IPR003953 -
Aip05g00793 614 SUPERFAMILY FAD/NAD(P)-binding domain 39 455 IPR036188 -
Aip05g00793 614 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 614 IPR030664 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00793 K00234 - gmx:100802169 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00793 05 10442645 10447896 Aip05g00793 05 10442645 10447896 ECH