Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00757 ATGCAGCCCTGTCGGTCGACACCGCCATGCCGTCTGTACTGCCACTATGTCGGAAAATTCCTCCACGCCGCCACTTTTGGAGgaaatcaaattgaggtagaggagtcccttTCTTTGATCTTCCATCTTATCCTGGGTTACGTTCCGTATCATTCACCAAGAGGATTATCGCATGCTAATCCAAAGTGGGAGTCTCATAGTGCTGACACAACAAAGACTAAGGGTGTTGAATCCAATGCATTACTTGATGCTACGAAGAAGAAAGGTAATTCTAACTCTTCTTCTGCTACTTCTAGACATCGAGATATTAAATGCTTCAAGTGTCATGGTATGGGTCATTATGCTAGTGATTGCCCAAATAGGAAAATGCTTCTGAGATACATAAAACGAGACTCAGCTGCGGAAATCCCCACCCAAACCCGAACCCACCTCTCTGCGCTCTTTCATCAAACAGGTTCCTTTCATACAAATCTTGTTCCTCCATCACCTTCTTCTTCTTCTCCCCACCTTTCAATTATTCATCCCCTCGATTTTCTGCAACTTGTCTCTTCTTCCTTCATTTCAGATTTGACTATGATCAAGCTTTTTAAAGTAAAGGAAAAGCAGAGAGAACTTGCAGAAAATGCAAGTGGTGGAGCACCCGTGAAGAAGCAAAGCGCCGGCGAGTTGCGCCTTCACAAAGATATAAGTGAGCTGAATCTTCCAAAATCTTGTACCATACAATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTACAATTCGACCTGATGATGGTTATTACTTAGGTGGTATATTTTTGTTTTCCTTCCAAGTATCTCCCATATATCCGCATGAAGCACCAAAGGTTAAGTGCAAGACAAAGGTCTACCATCCAAATATTGATTTGGAAGGAAATGTTTGTCTTAACATCTTAAGAGAAGATTGGAAACCTGTCCTCAATATAAACACGGTTATTTATGGCTTGTATCATCTATTCACGGAACCAAACTATGAGGATCCACTGAATCACGATGCTGCTGCTATGTTGAGAGAGAACCCAAAATTGTTTGAATCTAATGTGAGGAGGGCCATGGCTGGTGGATATGTGGGGCAAACCTTTTTCCCACGCTGTATCTAG 1125 0.4133 MQPCRSTPPCRLYCHYVGKFLHAATFGGNQIEVEESLSLIFHLILGYVPYHSPRGLSHANPKWESHSADTTKTKGVESNALLDATKKKGNSNSSSATSRHRDIKCFKCHGMGHYASDCPNRKMLLRYIKRDSAAEIPTQTRTHLSALFHQTGSFHTNLVPPSPSSSSPHLSIIHPLDFLQLVSSSFISDLTMIKLFKVKEKQRELAENASGGAPVKKQSAGELRLHKDISELNLPKSCTIQFPNGKDDLMNFEVTIRPDDGYYLGGIFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAMLRENPKLFESNVRRAMAGGYVGQTFFPRCI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00757 374 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 220 365 IPR000608 -
Aip05g00757 374 CDD UBCc 224 358 IPR000608 -
Aip05g00757 374 Pfam Ubiquitin-conjugating enzyme 224 359 IPR000608 -
Aip05g00757 374 PANTHER - 202 364 - -
Aip05g00757 374 SMART ubc_7 223 365 - -
Aip05g00757 374 Gene3D Ubiquitin Conjugating Enzyme 216 374 IPR016135 -
Aip05g00757 374 ProSiteProfiles Zinc finger CCHC-type profile. 104 120 IPR001878 GO:0003676|GO:0008270
Aip05g00757 374 SUPERFAMILY Retrovirus zinc finger-like domains 87 122 IPR036875 GO:0003676|GO:0008270
Aip05g00757 374 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 202 364 - -
Aip05g00757 374 MobiDBLite consensus disorder prediction 59 97 - -
Aip05g00757 374 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 292 307 IPR023313 -
Aip05g00757 374 Gene3D - 83 126 - -
Aip05g00757 374 SUPERFAMILY UBC-like 213 372 IPR016135 -
Aip05g00757 374 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Aip05g00757 374 MobiDBLite consensus disorder prediction 72 97 - -
Aip05g00757 374 Pfam Zinc knuckle 103 120 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00757 Aip-Chr5 9749748 9757815 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00757 K10579 - gmx:100813186 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00757 05 9749748 9757815 Aip05g00757 05 9749748 9757815 ECH