Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00745 ATGGCAACAGCCGAGAGTAGTAGAAGAATTCTGAAACCATCCAAGTGGTTCTCCAAGAAAAGTAGTAGTAGCCTCCACCGAACATCATTAACGGCGCTAAACCTAAGCACAACTCCAACTACTACTAGAGACACAGAAAATGAAGCCATGAGGGAGGTTTTCCGTCACTTTGATGCTAACGGAGATGGAAAAATCTCTGCCTTTGAGCTCAGGTCCTATTTCGGATCCATTGGAGACTACTTGTCCCCCGACGAAGCTCAAGGGCTCATCCAAGACCTGGACTCCGATGGCGACCATTTGTTGGACTTTGAGGATTTCATGAAGCTCATGAGCATGAACAACGATGATGATCTGAGGAAAGCTTTTGAGATGTTCGCGTGGGAGAAGGAAAACACGGAGGTTTCATCGTCATCGTCAGGTAGTATCACCCCGAAGGGTTTGCAACGGATGCTGCAGCGACTTGGTCTTGAAAGCTCATATGATGATTGCGTCGCCATGATTGCTGCCTTCGACACTGATCATAACGGTGTCCTTGATTTCAACGAGTTTCACCACATGATGATGATATCCTAA 573 0.4677 MATAESSRRILKPSKWFSKKSSSSLHRTSLTALNLSTTPTTTRDTENEAMREVFRHFDANGDGKISAFELRSYFGSIGDYLSPDEAQGLIQDLDSDGDHLLDFEDFMKLMSMNNDDDLRKAFEMFAWEKENTEVSSSSSGSITPKGLQRMLQRLGLESSYDDCVAMIAAFDTDHNGVLDFNEFHHMMMIS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00745 190 ProSiteProfiles EF-hand calcium-binding domain profile. 158 190 IPR002048 GO:0005509
Aip05g00745 190 Gene3D - 115 190 - -
Aip05g00745 190 Gene3D - 7 114 - -
Aip05g00745 190 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Aip05g00745 190 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Aip05g00745 190 SUPERFAMILY EF-hand 35 188 IPR011992 -
Aip05g00745 190 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Aip05g00745 190 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 35 188 - -
Aip05g00745 190 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Aip05g00745 190 Pfam EF-hand domain pair 48 111 IPR002048 GO:0005509
Aip05g00745 190 SMART efh_1 162 190 IPR002048 GO:0005509
Aip05g00745 190 SMART efh_1 85 113 IPR002048 GO:0005509
Aip05g00745 190 SMART efh_1 49 77 IPR002048 GO:0005509
Aip05g00745 190 CDD EFh 51 111 IPR002048 GO:0005509
Aip05g00745 190 PANTHER CALCIUM BINDING PROTEIN 35 188 - -
Aip05g00745 190 Pfam EF-hand domain pair 139 187 IPR002048 GO:0005509
Aip05g00745 190 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00745 Aip-Chr5 9584717 9585600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00745 12 189 EF-hand Containing Proteins AT3G50770 44.444 2.63e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00745 K13448 - gmx:100500092 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00745 05 9584717 9585600 Aip05g00745 05 9584717 9585600 ECH
Aip05g00745 05 9584717 9585600 Aip07g02600 07 107874866 107875770 ECH