Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00741 ATGACCATGCGGTTCAGGATCTTGTTCTTCTGCAAGGTTAACCTCGCCAACAGGTTAACCCTGCAATTGCAACAAGTTCGTTCCTATGCCCGCAATCCCTTTCCCAACAGAGTCTCTCACTACCTCTACCGTGCCAAGCTCATTGACTCCATTCGACTCTCTCTGCGCTCGAGCAACCCCAACTCACTCTCCACTCTCCTGAACGATCGTCTTCTTGATTCCTTCGTTATCACTCAGGCCCTGCGTTCTGCTCCTTCCGCCGACTCTGCTATCTCTTTTCTCAATGCCCTTCAGGAAAGTCCCCGTTTTTCGCATACCCAACACACCCTTCATGCTCTTGCTACTGTTCTTGCCAGGTCTGGTCGAACCTCTGAGCTCAACTCCCTCATTGATGCTATTCGTGCCAAACAGTTCGGCAATGTTAAGATCAGCTTCATGAATCTCATGAACTGGCATGCTGCTGCTGGGGACCTTGATTCTGTTCTTGCTGTTTGGGATGAGTATAGGCTTGCCAACAACCGTGTCTGCACCGAGTCTTATAACATTGTCATGGCTCTTTCTGCGCAAATGGGGAAGGACTATGAAGTTGTAAGATCATTCTATAGGATGATTGATGAAGGATTGCTTCCTAATTGCAGAAGCTATAGTATAGTAATTGAGCACCTTGTAAAATCTGGAAAAGTATTGGAAGCATTGGAGGTTTTTAAAATGCTGCCTTCAATGAGGATCAAACGCACTTTGAAACAGTACACTGTTCTGATTGACTGTTTCATTGCCTGCAAACGGTTTGATGAAGTGAAAACCTTGCTTGATGAAATGCAAATTGATGGAATACTGCCAAGTCGAGCAATGTGTTTGTTACTTCAGAAGATGCAGGAGGAAGGATTTCTCAAGGAGAGTGACTTATTGTTCAGGGAAACTCTGCAAGATGAAAGAATAAAGAATGTGATATATTCTGTAGAAAGATGTGTTGATGATGAGGAAGAGGATGAGGATGAAAATGTAAGCCATGCTAGTCAATGTGATCATACTGATGAGGTTCAGTTAAAACCATGGATGGATCCACATGCTTTGGCTAGTGCCTTACAGAATTGGAGTCCTGATGAGGTATCGGCACTTGAGGGTGCAAACTTTGTGTGGACAACCAGGTTGGTCTGCAAGATACTTAGAAGTTTCAAGTCACCAGAAACCGCATGGAATTTCTTCTGTTGGGTTGCTTGTCAACCGGGTTTCACACATGATATATACACAGTACAAAGAATTATGACCCTTCTAGCACGCCATGGTCGTACTGAATTGGTTGATAGACTCATCTCCAAAATCAGAATGGAGGAAATGAGACTGCCATTCAGCACCATCAGGCTAATCATCGAATTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTAAAGGTTTTCAATGATGTTCGAATACTTTGTGGGCCCATATCAAAATCTAATCTGATGCTTTTGTATTCTTCTCTCTTAAGAACATTAACCAAATGTGGAAGGAATTCCGATGCCCTGGATATACTCGATCAGATGATCTTGAATGATATTTGCCCTGATATGCAAACCTTTTCAGGACTAATGCACTATTTTTCGAACCTTGGGGATATAAAAACAGTGCAGAGACTCTTTGCAATGGTTAGGCAGAGTGGTGTGGAGCCAGATGCTTATCTCTATAAGGTGCTTATCCAAGGTTACTGCAAGTCAAAAAGAGCTGCACTAGCATGGAGGCTATTTGAAGATATGAGGAATTCAGGTCTGATGCCTGATTCTGCCACAAAAGAATTGCTAGTGAAAAGCCTCTGGAAAGAAGGGAGACGAAGAGAAGCTGCAGCTATTGAAGAGAGTTGTGAGGAAGTAAATGTGGTACTTCCGCATGCATTGCGTGGTCATGAATGGACTGTCAGCTCTGCTGATCTCTCGAAAGTTTATAATCTTTATTCCGATTGTTTTGCTTCAAATGGTGGCTAG 1980 0.4318 MTMRFRILFFCKVNLANRLTLQLQQVRSYARNPFPNRVSHYLYRAKLIDSIRLSLRSSNPNSLSTLLNDRLLDSFVITQALRSAPSADSAISFLNALQESPRFSHTQHTLHALATVLARSGRTSELNSLIDAIRAKQFGNVKISFMNLMNWHAAAGDLDSVLAVWDEYRLANNRVCTESYNIVMALSAQMGKDYEVVRSFYRMIDEGLLPNCRSYSIVIEHLVKSGKVLEALEVFKMLPSMRIKRTLKQYTVLIDCFIACKRFDEVKTLLDEMQIDGILPSRAMCLLLQKMQEEGFLKESDLLFRETLQDERIKNVIYSVERCVDDEEEDEDENVSHASQCDHTDEVQLKPWMDPHALASALQNWSPDEVSALEGANFVWTTRLVCKILRSFKSPETAWNFFCWVACQPGFTHDIYTVQRIMTLLARHGRTELVDRLISKIRMEEMRLPFSTIRLIIEFYGISKNADAALKVFNDVRILCGPISKSNLMLLYSSLLRTLTKCGRNSDALDILDQMILNDICPDMQTFSGLMHYFSNLGDIKTVQRLFAMVRQSGVEPDAYLYKVLIQGYCKSKRAALAWRLFEDMRNSGLMPDSATKELLVKSLWKEGRRREAAAIEESCEEVNVVLPHALRGHEWTVSSADLSKVYNLYSDCFASNGG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00741 659 TIGRFAM PPR: pentatricopeptide repeat domain 561 593 IPR002885 -
Aip05g00741 659 TIGRFAM PPR: pentatricopeptide repeat domain 250 281 IPR002885 -
Aip05g00741 659 TIGRFAM PPR: pentatricopeptide repeat domain 492 523 IPR002885 -
Aip05g00741 659 TIGRFAM PPR: pentatricopeptide repeat domain 214 244 IPR002885 -
Aip05g00741 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Aip05g00741 659 Pfam PPR repeat family 557 604 IPR002885 -
Aip05g00741 659 Gene3D Tetratricopeptide repeat domain 364 482 IPR011990 GO:0005515
Aip05g00741 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Aip05g00741 659 Pfam PPR repeat 250 278 IPR002885 -
Aip05g00741 659 Pfam PPR repeat 214 241 IPR002885 -
Aip05g00741 659 Pfam PPR repeat 492 518 IPR002885 -
Aip05g00741 659 Gene3D Tetratricopeptide repeat domain 487 653 IPR011990 GO:0005515
Aip05g00741 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Aip05g00741 659 Gene3D Tetratricopeptide repeat domain 76 355 IPR011990 GO:0005515
Aip05g00741 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Aip05g00741 659 PANTHER OS01G0167750 PROTEIN 20 656 IPR044175 -
Aip05g00741 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00741 121 633 Glycosyltransferase AT1G05670 20.943 1.40e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00741 - - gmx:100779372 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00741 05 9569650 9571796 Aip05g00741 05 9569650 9571796 ECH