Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00713 ATGGACGGTTACAACTCCGACGGGAACACTAGGAAACCCCTTATCACCATTGACGCCCCACATTTATTAGAAACTGCTCAAATGGCCGTTGACAATGATTCCTTACTCTCTCCTCTTGCCAAGTCTCCATGGTCCTCTCACATGAACCACAACACCAACATTGGAGGAGATGGCTTCACCAACCCCAACGATGAAGCTCTCGTTGGCTCCCTCGTCCGCGAAGAAGGCCACATATACTCCCTCGCTGCCACCAGGGACCTTCTCTACACCGGCTCCGACAGCAAGAACATTAGGGTTTGGAAGAACCAGAAGGAGTTTGCAGGCTTCAAATCCAACAGCGGCTTGGTCAAATCCATCGTCATCGCCGGTGAAAAGATTATCACTGGCCACCAAGACGGCAGGATTAGGGTTTGGAAGGTGTCTTCGAGAAACGAACAAATACACAGACGCATTGCCACTCTTCCCACGCTCAGAAACTACATCAAGTGCTCCATGAGACCCAGCAACTACATCGAGGTTCGAAAGAACCGCAATGTGCTTTGGATCAAGCACTACGACGCCATCTCCTGCCTTAGTGTCACGGAGGACTATGCCTTCATATACTCAGCTTCTTGGGACAAGACCTTCAAGGTTTGGCGAGCCTCCAACTTCAAGTGCTTGGAGTCTGTGGTGGCGCATGACGACGCCGTTAACTCCTTGGTTGTGGCGCCGGAAGGCTTGGTGTTCTCGGGGTCCGCGGATGGCACTGTCAAAATCTGGCGGCGCGAGATGCAAGCGAAAGGAACGAAACACTTCTTCCAGCAGACATTGCTGAAGCAAGAGTGTGCGGTGACGGCACTGGTGATAAACGCGGACGGGAATGTTCTGTACGGCGGTTCGTCGGACGGGTTGGTGAACTTCTGGGTGAGGGGGACAAAGTACGAACACATGGGGATACTTCGGGGGCATAAACTGGCGGTGCTGTGTTTGGCGACGGCGGGGAACTTGATATTGAGTGGGTCGGCGGATATGGGGATCTGCGTGTGGAAGAGGACGGTTAGCAACGAGCATGTTTGCCTGACGACGTTGACCGGTCACACTGGACCGGTGAAGTGTCTGGCGGTGGAGAAGGACCCGGAGGCCATGTTGAATGACAAGAAGTGGATTGTGTATAGCGGCAGCTTGGACAAATCCGTCAAGGTTTGGAGAGTTTGCGAGAACGCGCCGCCCTCCCAACACGGCCACCAGCAATCTCGTACTAGTTCCGAGTTCCCCAGAGTCTCTTCTTTGAGGAAAATGGGTTCCAGAAGATACTAA 1296 0.5324 MDGYNSDGNTRKPLITIDAPHLLETAQMAVDNDSLLSPLAKSPWSSHMNHNTNIGGDGFTNPNDEALVGSLVREEGHIYSLAATRDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKSIVIAGEKIITGHQDGRIRVWKVSSRNEQIHRRIATLPTLRNYIKCSMRPSNYIEVRKNRNVLWIKHYDAISCLSVTEDYAFIYSASWDKTFKVWRASNFKCLESVVAHDDAVNSLVVAPEGLVFSGSADGTVKIWRREMQAKGTKHFFQQTLLKQECAVTALVINADGNVLYGGSSDGLVNFWVRGTKYEHMGILRGHKLAVLCLATAGNLILSGSADMGICVWKRTVSNEHVCLTTLTGHTGPVKCLAVEKDPEAMLNDKKWIVYSGSLDKSVKVWRVCENAPPSQHGHQQSRTSSEFPRVSSLRKMGSRRY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00713 431 MobiDBLite consensus disorder prediction 401 431 - -
Aip05g00713 431 SMART WD40_4 306 343 IPR001680 GO:0005515
Aip05g00713 431 SMART WD40_4 216 254 IPR001680 GO:0005515
Aip05g00713 431 SMART WD40_4 263 302 IPR001680 GO:0005515
Aip05g00713 431 SMART WD40_4 102 139 IPR001680 GO:0005515
Aip05g00713 431 SMART WD40_4 349 396 IPR001680 GO:0005515
Aip05g00713 431 SMART WD40_4 64 101 IPR001680 GO:0005515
Aip05g00713 431 SMART WD40_4 175 213 IPR001680 GO:0005515
Aip05g00713 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 301 IPR001680 GO:0005515
Aip05g00713 431 Gene3D - 261 424 IPR015943 GO:0005515
Aip05g00713 431 SUPERFAMILY WD40 repeat-like 68 405 IPR036322 GO:0005515
Aip05g00713 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 253 IPR001680 GO:0005515
Aip05g00713 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 343 IPR001680 GO:0005515
Aip05g00713 431 CDD WD40 75 396 - -
Aip05g00713 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 253 - -
Aip05g00713 431 MobiDBLite consensus disorder prediction 403 421 - -
Aip05g00713 431 Gene3D - 55 179 IPR015943 GO:0005515
Aip05g00713 431 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 26 416 IPR045182 -
Aip05g00713 431 PRINTS G protein beta WD-40 repeat signature 126 140 IPR020472 -
Aip05g00713 431 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Aip05g00713 431 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Aip05g00713 431 PANTHER BNAANNG11810D PROTEIN 26 416 - -
Aip05g00713 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Aip05g00713 431 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515
Aip05g00713 431 Pfam WD domain, G-beta repeat 352 395 IPR001680 GO:0005515
Aip05g00713 431 Pfam WD domain, G-beta repeat 184 212 IPR001680 GO:0005515
Aip05g00713 431 Pfam WD domain, G-beta repeat 309 343 IPR001680 GO:0005515
Aip05g00713 431 Gene3D - 180 260 IPR015943 GO:0005515
Aip05g00713 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 148 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00713 Aip-Chr5 9010501 9011796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00713 181 395 Miscellaneous Gene Families AT5G08390 25.000 1.10e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00713 - - gmx:100819990 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00713 05 9010501 9011796 Aip05g00713 05 9010501 9011796 ECH