Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00693 ATGGTATCCGAATCGGAGCTCATCGGGCGCCTCCGCGAGTTCCTCCGTAGCTCCGACCTAAACACCACCACAACCGCCACCGTCCGCCGCCAGCTCGAGGCCGATTTCGGAATCGATTTGTCCGATAGGAAGGCATTCATTCGGGAACAGGTGGACTTGTTCCTTCAGAGCGAGCACAACCATCCACAAGAACAAGAGGAACCGCAACCGGCAGATGAAGATGACGAAGAAGAAAAAGATGAAGAGGCCGATAAACCCGAACGAAGCCGGGGTTCTGATTCCAAGGGAGAAACGGAAGAAGAAGAAGAAGACGATGATGAAGACGAAGAGGAACAGAAATCCAAAAATGCTCGGAATGGGAAGAAGAATAAAGGACGATCTAACAAGGAAGGTAGTGAGGTAGTAAAAAAACGAGGTGGCGGTTTTTGTAAACTATGTAGCCTGTCTCCACAACTTCAGAAATTCACTGGAGCACCAGAAATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAACAATTTGCAAGATGCAAACAATAGGCGAAATATCATTTGTGATGAACCATTGCGAGCTATTTTTGGTGTCGATTCCATCAACATGTTCCAAATGAATAAAGCACTAACAAAGCATATCTGGCCATTAGATTCAGATGACGTTATCCCGGTGAAGACAGCACCAAAGGAAAAGGAAAAGGAGAAGGAAAAGGAAAAGCAGAAGAAACATGAGAGAGAAGGCGAATCAGAGGAACCAAAGAAAAAGGAAAAACGTCAGAAGGGGGGGAAATCAGGTTTTCTTGCACCTCTTCAACTATCAGATGCCCTTGTAAATTTCCTTGGTACTGGAGAAAGTGAGTTATCAAGAGCTGAGGTTATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATATGTGACAAGAAGCTGAAAGAGCTCTTCGATCTTGACACCTTCACTGGCTTCACTGTTACCAAACTGCTGGCTCCTCATTTTATAAAGGCAGAGCAATAA 1053 0.4463 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSDRKAFIREQVDLFLQSEHNHPQEQEEPQPADEDDEEEKDEEADKPERSRGSDSKGETEEEEEDDDEDEEEQKSKNARNGKKNKGRSNKEGSEVVKKRGGGFCKLCSLSPQLQKFTGAPEMARTEVVKQLWAYIRENNLQDANNRRNIICDEPLRAIFGVDSINMFQMNKALTKHIWPLDSDDVIPVKTAPKEKEKEKEKEKQKKHEREGESEEPKKKEKRQKGGKSGFLAPLQLSDALVNFLGTGESELSRAEVIKRMWDYIKGNNLQDPSDKRKIICDKKLKELFDLDTFTGFTVTKLLAPHFIKAEQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00693 350 SUPERFAMILY SWIB/MDM2 domain 138 220 IPR036885 -
Aip05g00693 350 MobiDBLite consensus disorder prediction 228 268 - -
Aip05g00693 350 MobiDBLite consensus disorder prediction 111 134 - -
Aip05g00693 350 ProSiteProfiles SWIB/MDM2 domain profile. 141 218 IPR003121 -
Aip05g00693 350 MobiDBLite consensus disorder prediction 58 134 - -
Aip05g00693 350 PANTHER SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN 1 348 - -
Aip05g00693 350 CDD SWIB-MDM2_like 273 345 - -
Aip05g00693 350 MobiDBLite consensus disorder prediction 228 265 - -
Aip05g00693 350 Gene3D SWIB/MDM2 domain 263 350 IPR036885 -
Aip05g00693 350 CDD SWIB-MDM2_like 146 216 - -
Aip05g00693 350 Gene3D SWIB/MDM2 domain 136 224 IPR036885 -
Aip05g00693 350 SUPERFAMILY SWIB/MDM2 domain 266 349 IPR036885 -
Aip05g00693 350 MobiDBLite consensus disorder prediction 68 82 - -
Aip05g00693 350 Pfam DEK C terminal domain 2 55 IPR014876 -
Aip05g00693 350 Gene3D - 1 59 - -
Aip05g00693 350 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 348 - -
Aip05g00693 350 Pfam SWIB/MDM2 domain 145 216 IPR003121 -
Aip05g00693 350 Pfam SWIB/MDM2 domain 272 345 IPR003121 -
Aip05g00693 350 SMART swib_2 142 221 IPR019835 -
Aip05g00693 350 SMART swib_2 269 350 IPR019835 -
Aip05g00693 350 SUPERFAMILY DEK C-terminal domain 3 56 - -
Aip05g00693 350 ProSiteProfiles SWIB/MDM2 domain profile. 268 347 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00693 Aip-Chr5 8829757 8834989 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aip05g00693 SWIB 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00693 K15223 - gmx:100786835 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00693 05 8829757 8834989 Aip05g00693 05 8829757 8834989 ECH