Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00668 ATGTCCAAGTTTAGTTTCCTTAAGTCTAATTCTAGCATATCATCTTCAAACAAGAACAGCTTTACATCAAGAAGAGGGAGTTTGAAGCCAAAAGCAGAGGAAATGAAATGGGTGTTCGAGAAATTCGACAGCAACAAAGATGGAAAGATATCAGTCCAAGAGTACAAGGCTGCTGCAAAGGCCTTGGATAGAGGAATGGGTGATGCTGAGGTGGCGAAGGCATTCGAATTGATGGACAAAGATGGAGACGGATTCATTGAGTTGAATGAATTGATGGAGATGTTTGGTGAAGGGAGGATGAAGGAAGCAGAGATGAAGAAGGCTTTCGAGGTGTTCGACTTGAATGGCGATGGGAAGATCAGTGCTGAGGAGCTGTCACAAATTCTGAAGAGGCTTGGCGAGGGTTGCAGCCTGAGTGCTTGTAGGAAGATGGTGAAGGGTGTTGATGGTAATGGCGATGGTTTTATTGACTTTAATGAGTTCATCACCATGATGACCACCACTAACAATGAAGTTTAA 519 0.4355 MSKFSFLKSNSSISSSNKNSFTSRRGSLKPKAEEMKWVFEKFDSNKDGKISVQEYKAAAKALDRGMGDAEVAKAFELMDKDGDGFIELNELMEMFGEGRMKEAEMKKAFEVFDLNGDGKISAEELSQILKRLGEGCSLSACRKMVKGVDGNGDGFIDFNEFITMMTTTNNEV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00668 172 CDD EFh 104 166 IPR002048 GO:0005509
Aip05g00668 172 MobiDBLite consensus disorder prediction 1 30 - -
Aip05g00668 172 CDD EFh 34 95 IPR002048 GO:0005509
Aip05g00668 172 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Aip05g00668 172 Gene3D - 2 98 - -
Aip05g00668 172 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 9 169 - -
Aip05g00668 172 ProSiteProfiles EF-hand calcium-binding domain profile. 66 98 IPR002048 GO:0005509
Aip05g00668 172 SMART efh_1 70 98 IPR002048 GO:0005509
Aip05g00668 172 SMART efh_1 34 62 IPR002048 GO:0005509
Aip05g00668 172 SMART efh_1 104 132 IPR002048 GO:0005509
Aip05g00668 172 SMART efh_1 140 168 IPR002048 GO:0005509
Aip05g00668 172 ProSitePatterns EF-hand calcium-binding domain. 149 161 IPR018247 -
Aip05g00668 172 SUPERFAMILY EF-hand 33 166 IPR011992 -
Aip05g00668 172 Gene3D - 99 172 - -
Aip05g00668 172 ProSiteProfiles EF-hand calcium-binding domain profile. 30 65 IPR002048 GO:0005509
Aip05g00668 172 Pfam EF-hand domain pair 103 165 IPR002048 GO:0005509
Aip05g00668 172 Pfam EF-hand domain pair 33 95 IPR002048 GO:0005509
Aip05g00668 172 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Aip05g00668 172 MobiDBLite consensus disorder prediction 1 26 - -
Aip05g00668 172 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Aip05g00668 172 ProSitePatterns EF-hand calcium-binding domain. 43 55 IPR018247 -
Aip05g00668 172 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00668 Aip-Chr5 8434054 8434920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00668 4 169 EF-hand Containing Proteins AT2G15680 42.515 1.30e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00668 K13448 - gmx:100787013 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00668 05 8434054 8434920 Aip05g00668 05 8434054 8434920 ECH