Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip05g00507 | ATGAGTGTGCAGCAAAATTCAGATGTGAATGTGCGAATTGCGAGAATCGCCTCCCATCTCAACCCTCCCAATCCCAAGGTGGAGGGTGATGGTGATGGGTGCTTGACGCGTGCACATTGCAGATCCAAAGGTGCTGCCCCGGGGTTCAAAGTGGCCATTTTGGGGGCTGCAGGTGGCATAGGACAGCCTCTCTCCATGTTGATGAAGATGAATCCTCTCATCTCCGTTCTTCACCTATACGACGTCGTCAACACCCCCGGCGTCACTGCTGATGTCAGCCACATGGACACTGGCGCTGTTGTAAGCTCATTATTCTATCACAATGCTTTCATAGTTTCATTTCTTTACCTTGGATTGGATTGTTTTGCCGGAATAAGTGAAAGCTCTTTCCATTTGGTTGTTGCCCGCAAACCTGGTATGACAAGAGATGATCTCTTCAACATAAATGCTGGAATTGTTAAATCACTCTCCGAAGCAGTTGCAAGGTTCTGTCCCAAAGCTGTTGTCAACATCATAAGTAATCCTGTTAACTCCACGGTTCCAATTGCTGCTGAAGTTTTCAAAAAAGCTGGTACTTATGATCCTAAGAAACTTTTGGGAGTGACAAAGCTTGATGTTGTTAGAGCCAATACATTTGTGGCAGAAGTTCTAGGTGTTGATCCAAGGGATCTGGATGTCCCTGTCATTGGGGGACATGCAGGAATCACTATTTTACCTCTTCTTTCTCAGGTTAAACCTCCAAGCACTTTCACCCCAAAAGAGGTCGAGTACCTGACAGATCGCATACAAAATGGTGGAACTGAAGTTGTTGAGGCCAAAGCTGGAGCTGGCTCTGCAACTCTATCAATGGCATTTGCTGCTGCTAAATTTGCAGAATCATGCCTCCGTGCACTGAGAGGAGATGCCGGGATCATTGAATGTGCATATATTGATTCACAGGTGACTGAAATCCCATACTTTGCATCAAAAGTGCGACTTTCCCGTGGTGGGGTTGAGGAAGTTCTTCCTCTTGGTCCCCTAAATGATTATGAGAGGGAGAGTTTGGAAAAGGCCAAGAAAGAGTTAGCAAGTAGCATCGAGAAAGGTGTTGCTTTCGTCAGAAAATGA | 1107 | 0.4598 | MSVQQNSDVNVRIARIASHLNPPNPKVEGDGDGCLTRAHCRSKGAAPGFKVAILGAAGGIGQPLSMLMKMNPLISVLHLYDVVNTPGVTADVSHMDTGAVVSSLFYHNAFIVSFLYLGLDCFAGISESSFHLVVARKPGMTRDDLFNINAGIVKSLSEAVARFCPKAVVNIISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTKLDVVRANTFVAEVLGVDPRDLDVPVIGGHAGITILPLLSQVKPPSTFTPKEVEYLTDRIQNGGTEVVEAKAGAGSATLSMAFAAAKFAESCLRALRGDAGIIECAYIDSQVTEIPYFASKVRLSRGGVEEVLPLGPLNDYERESLEKAKKELASSIEKGVAFVRK | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip05g00507 | 368 | Gene3D | - | 202 | 368 | IPR015955 | GO:0003824|GO:0016616 | |
| Aip05g00507 | 368 | TIGRFAM | MDH_euk_gproteo: malate dehydrogenase, NAD-dependent | 50 | 367 | IPR010097 | GO:0006099|GO:0030060 | |
| Aip05g00507 | 368 | PANTHER | MALATE DEHYDROGENASE, GLYOXYSOMAL | 6 | 368 | - | - | |
| Aip05g00507 | 368 | Gene3D | - | 41 | 201 | - | - | |
| Aip05g00507 | 368 | PIRSF | Lac_mal_DH | 48 | 365 | IPR001557 | GO:0016616|GO:0019752 | |
| Aip05g00507 | 368 | PANTHER | MALATE AND LACTATE DEHYDROGENASE | 6 | 368 | - | - | |
| Aip05g00507 | 368 | Pfam | lactate/malate dehydrogenase, NAD binding domain | 50 | 200 | IPR001236 | GO:0016491 | |
| Aip05g00507 | 368 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 49 | 200 | IPR036291 | - | |
| Aip05g00507 | 368 | CDD | MDH_glyoxysomal_mitochondrial | 49 | 366 | IPR010097 | GO:0006099|GO:0030060 | |
| Aip05g00507 | 368 | Pfam | lactate/malate dehydrogenase, alpha/beta C-terminal domain | 202 | 366 | IPR022383 | GO:0016616 | |
| Aip05g00507 | 368 | SUPERFAMILY | LDH C-terminal domain-like | 201 | 366 | IPR015955 | GO:0003824|GO:0016616 | |
| Aip05g00507 | 368 | ProSitePatterns | Malate dehydrogenase active site signature. | 201 | 213 | IPR001252 | GO:0006108|GO:0016615 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip05g00507 | Aip-Chr5 | 5924456 | 5927132 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip05g00507 | K00026 | - | gmx:732641 | 532.332 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip05g00507 | 05 | 5924456 | 5927132 | Aip05g00507 | 05 | 5924456 | 5927132 | ECH |