Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00461 ATGGCGGAATCGGTGGAGCTTCCGAGCCGGTTGGCAATCCTTCCTTTCAGGAACAAGGTGCTGCTTCCCGGCGCCATCATCAGAATCCGCTGCACTTCTCCAACCAGTGTGAAGCTGGTGGAACAAGAGCTTTGGCAGCGAGAAGAGAAGGGGATGATTGGCATCTTGCCAGTTCGTGATGCTGCTGAAGTTAAGCCAGTGGGTCCCACTATGTCTCAAGGTGATACATTGATTAGTCTTGATTCTCTAGATCAAAGCTCAAAACTTCAAGGTGGTTCATCTGATTCTCATAAACTTGATACAAAAAATCAGAATGATGTTGTTCATTGGCATAACAGGGGGGTAGCTGCTCGAGCATTACACTTGTCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACGTATATAGTTGTTCTTGAAGGTTTGTGCAGATTCAGCGTCCAAGAACTAAGCACAAGAGGGACATACCATACTGCAAGGATCTCCTCGCTTGAGATGACTAAGACTGAGATGGAACAGGTGGAGCAAGACCCTGATTTCATAATGCTGTCTCGCCAATTTAAAGCGACTGCCATGGAGCTTATTTCTCTTCTAGAGCAGAAACAAAAAACTGGTGGAAGGACAAAGGTTCTTTTGGAGACTGTCCCAGTTCACAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGCTTTGAAGAACAACTCTCTATGTTGGATTCAGTTGATCCTAAAGTGAGGCTTTCAAAAGCAACTGAATTAGTTGATAGGCACTTACAATCTATCCGTGTAGCAGAGAAAATTTCACAAAAGGTTGAAGGACAACTGTCAAAATCTCAAAAGGAATTTCTTCTGCGTCAACAGATGAGGGCTATAAAAGAGGAACTTGGTGATGATGATGATGATGAGGATGACGGAATTTCTCACTATAAATTTCAATTTCAAAAAACTCTAGGATCACCATGGTCCAAGTATTCTAAAATTTTATGTAGAAAGTCAATTGACTTTAATGTGATGTTATCCCTCAGGAGACTTAAAAAAATGCAGCCCCAGCAACCTGGGTATAGCAGTTCACGGGCTTATCTGGAACTTCTTGCTGATCTGCCATGGCAGAAGGCCAGCAAAGAAATTGAACTTGACTTGAGAGCAGCACAGGAGCGCCTGGACAGAGATCATTATGGTTTAGTGAAGGTCAAGCAACGGATAATTGAGTACTTGGCTGTTCGCAAGCTTAAGCCAGATGCAAGGGGCCCTGTATTGTGCTTTGTTGGACCGCCAGGTGTTGGGAAAACATCATTGGCATCTTCTATTGCTTCAGCTTTGGGCAGAAAATTTGTGCGCATATCCCTTGGTGGTGTCAAGGATGAAGCTGATATTAGAGGACACAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTCATAGATGGACTAAAGAGAGTAGCTGTCTGCAATCCTGTCATGCTGCTCGACGAAATTGACAAGACTGGTTCTGATATTCGTGGAGATCCAGCTTCAGCATTGCTAGAAGTTCTTGATCCAGAACAAAATAAAACATTCAATGATCACTATTTGAATGTTCCATTTGATCTTTCCAAGGTAATATTTGTGGCTACAGCAAATAGGGCACAGCCGATTCCACCACCTCTCCTTGACAGGATGGAGGTCATTGAGCTTCCTGGATATACAGCTGAGGAAAAGCTAAGCATAGCCATGCGACATTTGATTCCTAGAGTTTTGGAACAGCATGGGTTGAGTTCTGAATTTCTTCAAATTCCAGAGGGGATGGTCAAGCTTGTTATTCATAGATATACTAGGGAAGCTGGTGTACGAAATTTGGAAAGGAATCTCGCTTCCCTTGCTCGTGCTGCTGCTGTAAGAGTAGCAGAGCAAGAACAGTTTGTCCCACTAAACAAAGGGATGGAGGGACTAGCTACACCACTTCTGGAAAACAGACTTGCTGATGGTGCTGAAGTTGAAATGGAAGTTATACCAATGGGTGTCAACAATCAAGACATTTCAAACACATTCAGGATCACCTCTCCGTTGGTTGTTGATGAAGCCATGCTTGAAAAAGTGCTTGGGCCTCCAAAGTTTGATGGAAGAGAGGCCGAACAACGTGTGGCAACCCCTGGGGTATCTGTGGGGCTAGTTTGGACTAGTTTTGGTGGAGAAGTTCAGTTTGTGGAGGCTACAGCAATGGTGGGGAAGGGTGAATTGCACCTGACTGGACAACTTGGTGATGTCATCAAAGAATCTGCTCAGATTGCTTTAACATGGGTAAGAACAAGAGCAGCTGATCTTAGGCTGGCTGCCACAGAAGGCATTAATCTGTTGGAGGGCCGCGATGTACATATACATTTTCCTGCTGGTGCTGTACCTAAAGACGGGCCTTCAGCTGGTGTGACTTTGGTCACAGCATTGGTATCACTTTTCAGCCGGAAAAGAATGAGATCAGATACTGCTATGACAGGGGAAATGACATTAAGGGGTCTCGTACTACCTGTTGGTGGTATCAAGGATAAGATATTAGCTGCACATCGGTATGGTATTAGGAGAGTCATCCTACCTGAGAAGAACTTGAAGGACTTGGCTGAAGTACCATCCTCGGTGCTGAACAACTTGGAGATACATCTTGCAAAGCGAATGGAAGATGTGTTAGAGCAAGCTTTTGAGGGCGGGTGCCCTTGGAGGCAGCACTCAAAATTGTGA 2712 0.4473 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGMIGILPVRDAAEVKPVGPTMSQGDTLISLDSLDQSSKLQGGSSDSHKLDTKNQNDVVHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYHTARISSLEMTKTEMEQVEQDPDFIMLSRQFKATAMELISLLEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKISQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDDEDDGISHYKFQFQKTLGSPWSKYSKILCRKSIDFNVMLSLRRLKKMQPQQPGYSSSRAYLELLADLPWQKASKEIELDLRAAQERLDRDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIASALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDIRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTAEEKLSIAMRHLIPRVLEQHGLSSEFLQIPEGMVKLVIHRYTREAGVRNLERNLASLARAAAVRVAEQEQFVPLNKGMEGLATPLLENRLADGAEVEMEVIPMGVNNQDISNTFRITSPLVVDEAMLEKVLGPPKFDGREAEQRVATPGVSVGLVWTSFGGEVQFVEATAMVGKGELHLTGQLGDVIKESAQIALTWVRTRAADLRLAATEGINLLEGRDVHIHFPAGAVPKDGPSAGVTLVTALVSLFSRKRMRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIRRVILPEKNLKDLAEVPSSVLNNLEIHLAKRMEDVLEQAFEGGCPWRQHSKL 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00461 903 SMART lon_5 10 257 IPR003111 -
Aip05g00461 903 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 793 812 - -
Aip05g00461 903 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 823 842 - -
Aip05g00461 903 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 424 443 - -
Aip05g00461 903 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 711 727 - -
Aip05g00461 903 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 846 864 - -
Aip05g00461 903 Pfam ATPase family associated with various cellular activities (AAA) 420 557 IPR003959 GO:0005524|GO:0016887
Aip05g00461 903 SUPERFAMILY PUA domain-like 10 256 IPR015947 -
Aip05g00461 903 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 903 IPR027501 GO:0004252|GO:0006515
Aip05g00461 903 CDD AAA 401 562 - -
Aip05g00461 903 Gene3D - 710 896 IPR014721 -
Aip05g00461 903 TIGRFAM lon: endopeptidase La 13 891 IPR004815 GO:0004176|GO:0005524|GO:0006508
Aip05g00461 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 634 IPR027417 -
Aip05g00461 903 SMART AAA_5 416 561 IPR003593 -
Aip05g00461 903 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 796 804 IPR008268 GO:0004176|GO:0004252|GO:0006508
Aip05g00461 903 Gene3D - 381 559 IPR027417 -
Aip05g00461 903 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 903 - -
Aip05g00461 903 PIRSF Lon_proteas 1 642 IPR004815 GO:0004176|GO:0005524|GO:0006508
Aip05g00461 903 PIRSF Lon_proteas 666 894 IPR004815 GO:0004176|GO:0005524|GO:0006508
Aip05g00461 903 Gene3D - 175 300 - -
Aip05g00461 903 ProSiteProfiles Lon proteolytic domain profile. 708 893 IPR008269 GO:0004176|GO:0004252|GO:0006508
Aip05g00461 903 Pfam Lon protease (S16) C-terminal proteolytic domain 685 892 IPR008269 GO:0004176|GO:0004252|GO:0006508
Aip05g00461 903 ProSiteProfiles Lon N-terminal domain profile. 11 257 IPR003111 -
Aip05g00461 903 SUPERFAMILY Ribosomal protein S5 domain 2-like 711 890 IPR020568 -
Aip05g00461 903 Gene3D - 1 165 IPR046336 -
Aip05g00461 903 Gene3D - 560 699 - -
Aip05g00461 903 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 257 IPR003111 -
Aip05g00461 903 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 903 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00461 Aip-Chr5 5221229 5228959 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00461 K01338 - gmx:100796650 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00461 05 5221229 5228959 Aip05g00461 05 5221229 5228959 ECH