Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00448 ATGTACGGTAACAGAGTGGCGGAGGGTGCGGGCGTTGATCGCAGGAAGCGAATCAACGACGTTCTCGACAAGCACTTGCACCGATCCTCACCCTCCACTTCCACCTCCGCCTCCACTAGGCCCATCAAGGCCCAAATCCAGGCCCAAATCCAAGCCAACAACTCCGACGCCACACTCGAGGAATCGGAAACCGACACCGGGGGATCGGACGTTAGTGCCTCCGACGACGGGGAAGACACCTCGTGGATCGCGTGGTTCTGCAGCCTCAGAGGGAACGAGTTCTTTTGCGAGGTCGATGATGATTACATTCAGGACGATTTTAACCTTTGTGGTTTGAGCAGCCAAGTTCCTTATTACGATTATGCCCTTGACTTGATTCTCGACGTTGACTCCTCCCACGAAGAACAAAATGAGTTGATTGAATCCGCCGCGGAGATGCTTTATGGTCTCATTCATGCCCGCTACATTTTAACAGGCAGAGGAATGGCTGCCATGCTGGACAAGTACAAGAATTATGACTTTGGTAGGTGTCCGAGAGTTTACTGCTCAGGGCAACCGTGCCTTCCGGTGGGTCAGTCCGACATCCCTAGGTCGAGCACTGTAAAGATATATTGCCCCAGGTGTGAAGACATTTACTACCCGCGATCCAAGTATCAAGGTAATATCGACGGAGCTTATTTTGGAACTACATTTCCTAACCTCTTCCTGATGACTTATGGTCATCTGAAGCCACAAAAGCCATCACAGAGCTATGTTCCAAGAGTTTTTGGTTTTAAAGTTCACAAGCCATGA 792 0.5038 MYGNRVAEGAGVDRRKRINDVLDKHLHRSSPSTSTSASTRPIKAQIQAQIQANNSDATLEESETDTGGSDVSASDDGEDTSWIAWFCSLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVDSSHEEQNELIESAAEMLYGLIHARYILTGRGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPNLFLMTYGHLKPQKPSQSYVPRVFGFKVHKP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00448 263 PRINTS Casein kinase II regulatory subunit family signature 81 97 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 PRINTS Casein kinase II regulatory subunit family signature 98 112 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 PRINTS Casein kinase II regulatory subunit family signature 148 169 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 PRINTS Casein kinase II regulatory subunit family signature 173 194 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 PRINTS Casein kinase II regulatory subunit family signature 223 240 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 MobiDBLite consensus disorder prediction 21 76 - -
Aip05g00448 263 PANTHER CASEIN KINASE II SUBUNIT BETA-2 5 262 - -
Aip05g00448 263 MobiDBLite consensus disorder prediction 28 76 - -
Aip05g00448 263 Gene3D - 174 248 - -
Aip05g00448 263 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 74 173 IPR016149 GO:0005956|GO:0019887
Aip05g00448 263 SUPERFAMILY Casein kinase II beta subunit 79 262 IPR035991 GO:0005956|GO:0019887
Aip05g00448 263 PANTHER CASEIN KINASE II SUBUNIT BETA 5 262 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 Pfam Casein kinase II regulatory subunit 81 259 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 SMART CK_II_beta_2 81 259 IPR000704 GO:0005956|GO:0019887
Aip05g00448 263 ProSitePatterns Casein kinase II regulatory subunit signature. 177 208 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00448 Aip-Chr5 5035290 5037921 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00448 K03115 - gmx:100793573 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00448 05 5035290 5037921 Aip05g00448 05 5035290 5037921 ECH