Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00382 ATGTTAGACGGAACCGAAGACGAAGAGAAGTTTCTCGCCGCCGGAATCGCTGGCCTTCAGCAGAATTCCTTCTACATGCACCGCGCATTGGACTCCAACAATCTAAGAGATGCTCTCAAGTATTCCGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTCTACATGCGCGCATTTGATCAGTTGAGGAAGCTGGAGATGTTCTTCGAGGAAGAGACTCGTCGTGGTTGCTCCATTATTGATCTCTATGAGCTCGTCCAGCACGCCGGCAACATTTTGCCTCGACTGTATCTCCTCTGTACAGTAGGATCTGTGTACATCAAATCAAAGGAAGCTCCTGCCAAGGATGTTCTAAAGGATCTTGTGGAGATGTGTCGTGGTATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTATCTTTCTCAAGTTAGTCGGGACAAATTGCCGGATATTGGTTCTGAGTATGAAGGGGATGCAGATACTGTATCTGATGCTGTAGAGTTTGTACTCCAAAATTTCACAGAAATGAACAAACTTTGGGTGCGGATGCAACATCAGGGGCCTGCCCGGGAGAAGGAGAAACGGGAGAAAGAAAGGAGTGAGCTGCGCGATCTTGTTGGGAAGAATCTCCATGTTCTCAGTCAGATAGAGGGTGTTGATCTTGATATGTACAAAGATATTGTGCTTCCCAGAGTATTAGAGCAGGTTGTAAATTGCAAAGATGAGTTGGCCCAGTTTTACTTGATGGATTGCATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTATTGTTGGGTGCATGCCCTCAGCTTCAGCCATCCGTTGATATCAAGACAGTACTGTCTCAATTAATGGAAAGGCTTTCACATTATGCTGCATCAAGTGCAGAGGTGTTGCCAGAATTTTTGCAAGTGGAAGCATTTGCCAAATTAAGCAATGCCATTGGCAGGGTGATAGAGGCACAGCCTGACATGCCCACTCTTGGAGTTGTAACTTTATATTCATCTCTTCTCACATTCACTCTTCATGTTCACCCGGATCGACTTGATTATGCAGATCAAGTCCTGGGAGCATGTGTGAGAAAACTCTCTGGCAAAGGGAAAATTGAAGACAGCAAGGCAACAAAGCAGGTTGTTGCTCTATTAAGTGCTCCATTAGAAAAATATAATGATATTATGACTGCCTTGAAGCTTTCAAATTATCCTCGTGTACTGGAATATCTCGATGTTCCAACTATTAGGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAATGGAACTCGCATTTCTACTTCAGACAAGGTTGAAGCATTGTTTGAATTGATAAAGGGGCTTATCAAGGATTCTGATGGGACCTCAAACGACAAGCTGGACGAAGATGACTTCAAAGAGGAGCAAAATTCTGTTGCCCGCCTAATCCAGATGTTTTATAATGATGATCCCGAAGAGATGCTTAAGATCATAGAAACTGTGAGGAAGCACATATTGGCTGGAGGACCAAAACGGCTGCCTTTCACTGTTCCACCTCTAGTTTTTTGTTCGTTAAAGTTGGTCCGACAGTTGCAAGGCCAAGAAGAAAATCCTTTTGGAGATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAACCAGATTATCGAGACTCTGTCCGGTATACCTGTGCCGGAATTGGCATTGCAGTTGTATTTGCAATGTGCTGAGGCTGCAAATGACTGTGAGTTGGAACCCGTTGCTTACGAGTTTTTCACCCAAGCTTATATTCTATACGAAGAAGAGATTTCTGATTCAAGAGCGCAGATCACGTGTATCCATTTGATAATAGGAACTCTTCAAAGGATGCACGTCTTTGGTGTTGAGAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCAGCAAAGCTTCTAAAGAAGCCAGATCAGTGCCGAGCTGTGTATGCATGCTCACATCTGTTTTGGGTTGAAGATCATGATAACATGAAAGATGGAGAAAGAGTCTTGTTGTGCCTCAAGCGGGCTTTAAGAATTGCAAATGCTGCACAACAAATGGCCAATGCAGCACGAGGTAGCACTGGATCAGTTATGCTCTTCATTGAGATATTGAACAAGTATCTATACTTCTTTGAGAAGGGGAACCCACAAATCACCGTTGCTTCAATCCAGAGCCTAATTGAGTTAATCATGAACGAAATGCAAAGTGACTCTACGACATCAGATCCAGCTGCTGAGGCTTTCTTAGCTAGTACTATGCGATATGTACAATTCCAGAAACAGAAGGGTGGTGCAGTTGGCGAGAAGTATGAACCCATCAAGTATGAACCCATAAAGGCTTGA 2385 0.4352 MLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVSDAVEFVLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDIVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGACPQLQPSVDIKTVLSQLMERLSHYAASSAEVLPEFLQVEAFAKLSNAIGRVIEAQPDMPTLGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVRKLSGKGKIEDSKATKQVVALLSAPLEKYNDIMTALKLSNYPRVLEYLDVPTIRVMATVIIQSIMKNGTRISTSDKVEALFELIKGLIKDSDGTSNDKLDEDDFKEEQNSVARLIQMFYNDDPEEMLKIIETVRKHILAGGPKRLPFTVPPLVFCSLKLVRQLQGQEENPFGDDASTTPKKIFQLLNQIIETLSGIPVPELALQLYLQCAEAANDCELEPVAYEFFTQAYILYEEEISDSRAQITCIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVEDHDNMKDGERVLLCLKRALRIANAAQQMANAARGSTGSVMLFIEILNKYLYFFEKGNPQITVASIQSLIELIMNEMQSDSTTSDPAAEAFLASTMRYVQFQKQKGGAVGEKYEPIKYEPIKA 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00382 794 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 1 788 - -
Aip05g00382 794 Gene3D - 464 774 IPR042491 -
Aip05g00382 794 Pfam Vacuolar protein sorting-associated protein 35 12 746 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aip05g00382 794 PANTHER VACUOLAR SORTING PROTEIN 35 1 788 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aip05g00382 794 PIRSF Retromer_Vps35 1 792 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aip05g00382 794 SUPERFAMILY ARM repeat 219 750 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00382 Aip-Chr5 4315973 4323932 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00382 K18468 - gmx:100811902 1462.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00382 05 4315973 4323932 Aip05g00382 05 4315973 4323932 ECH