Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00379 ATGAATCGGATGCGCGTGGGGTTCCGTATCTCCTCTGCCGCCGTGGCTGCGGCGGCGGAAAAGGGAGGAGTATGGCGGAGGAACATGTCGACGGTGTCAAAAGCGAAAGAAATAATTGAAGGGAAGAAGGGCAAAAATCGCAAAGCTACGAGCGAACTCTGCAACTACCTCGGCATCCCTCATCAGTCTCGTTCAGAGATGGCGTTGACCCTCTCTAAGTTCATGAAGCTCTACAATGCCAGGAGTCCTGGTATTAAGAAAGATGATATTTGGGAGAAGAATTTGAATACGTTGTTACGTGGCAAAGCTAGTATTGGTTTTCCTGAGGTTGCTAGAATTCTGTCTCCAGAATTTGGCCAGCAGGGTGGAATCAGCACCAAGGACAGTAACATGGATTCTCACACGGACAACACAAAGGGGAAGGGTTCAAAAAAGAAAGGAAAATCATCAAAGAAGGTTTTTCACTTTTATTCCAACAACACCGCGACTAAGGCGGCGAAGAAGGCGCCGAGCAGGCCGACGTGGGACGTGGGGATACAGAAGGTAGTGCCGGTGTCTTCCGAGCTCGGAAGCTTCCTCGGTGCTTCGGAGGTGTCCCGAACTCACGCTGTGAAGAGAGTGTGGGAGTACATCAAGCTGCAGAACCTTCACGGCTGTGTTCTTTTGCAGAATCCTAGTAATAAGAAGGAGATCTTTTGTGATGACAAGTTGAAGACTATTTTTGATGGGAAAGACAAGGTCGGGTTCACAGAGATTGCAAGATTGCTAGCTACCCATTTTGTAAAATCAGGCTAG 795 0.4855 MNRMRVGFRISSAAVAAAAEKGGVWRRNMSTVSKAKEIIEGKKGKNRKATSELCNYLGIPHQSRSEMALTLSKFMKLYNARSPGIKKDDIWEKNLNTLLRGKASIGFPEVARILSPEFGQQGGISTKDSNMDSHTDNTKGKGSKKKGKSSKKVFHFYSNNTATKAAKKAPSRPTWDVGIQKVVPVSSELGSFLGASEVSRTHAVKRVWEYIKLQNLHGCVLLQNPSNKKEIFCDDKLKTIFDGKDKVGFTEIARLLATHFVKSG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00379 264 PANTHER TRANSCRIPTION REGULATOR SWI/SNF-BAF60B FAMILY-RELATED 25 152 - -
Aip05g00379 264 Gene3D SWIB/MDM2 domain 176 264 IPR036885 -
Aip05g00379 264 ProSiteProfiles SWIB/MDM2 domain profile. 178 262 IPR003121 -
Aip05g00379 264 PANTHER TRANSCRIPTION REGULATOR SWI/SNF-BAF60B FAMILY-RELATED 174 263 - -
Aip05g00379 264 MobiDBLite consensus disorder prediction 121 149 - -
Aip05g00379 264 CDD SWIB-MDM2_like 183 260 - -
Aip05g00379 264 SMART swib_2 179 264 IPR019835 -
Aip05g00379 264 Pfam SWIB/MDM2 domain 183 260 IPR003121 -
Aip05g00379 264 SUPERFAMILY SWIB/MDM2 domain 177 262 IPR036885 -
Aip05g00379 264 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 25 152 - -
Aip05g00379 264 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 174 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00379 Aip-Chr5 4244857 4250637 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aip05g00379 SWIB 5.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00379 - - adu:107487278 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00379 05 4244857 4250637 Aip05g00379 05 4244857 4250637 ECH