Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00329 ATGGCTACTCAAATTGGTGGTTCACTTGTTTGTGGAGTTGCTATTGAAGGGGTTGTGAAAAGAACAAAACTCAACAATGAGGTTGGGAAGTGTAATTTCCATTTTAGAACAGCAACAGAAAGAAGGGCTTGGAATTCCATCAGGATTCTTCACAAGAAAGTGGTTTCTTTTGACAATTTTGTGAGACACTGTGGTTTGGTTGCTAATGAACCCATTTCTGATGTTGGGTTGAGTCATTTTGATGTGCATAATGATGACGATGATGATAGTGCATTATCAGAAAATGGCATCTTGATCAACAAGAAGAATTTTGTGTTTGATGGGGTAAATTTAGAAAACAAACCTAAAGTTCCAAGTGTACAAACTGAGCTTATAATGCTTTCTATACCTGCAATTGCTGGACAAGCAATTGAGCCCTTAGCGCAATTGATGGAGACTGCTTACATTGGCAGATTGGGAGTATTGGAGTTGGCATCTGCTGGTGTTTCCATGTCTTTGGCTATGTTCTTTGGATCTAGATTGTTCCTCATCATGGTTGGAATATCATCAGACTCACCAATGCGGATTCTATCAGAGCGATTTTTGTCGCTTAGAGCCATCGGTGCTCCGGCCGTTGTCATTTCTTTGGCTGTGCAAGGAATATTTAGGGGATTTAAAGACACTAGGACCCCTGTACAATGTTTAGGTTTTGGCAATTTGGCTGCAGTGTTTTTGTTTCCTGTACTTATTTATAATTTTAACATGGGTGTGGCTGGAGCTGCCTTGTCCACTGTCATATCTCAGTACATTGTGGCCACTTTGATGATATGGAGTCTCAGTAAAAGGACTAAACTGTCAATCCCAAATATTAGAAGCCTTCCTTTTGGTGGATACTTGAGATCTGGTGGTTTTCTTCTTGGGAGAACTTTAGCTTCTGTAATGACAATAACTTTGAGCACAACAATGGCTGCACGTCTCGGACCCTTAGCCACGGCAGCACATCAGATATGTTTGCAAGTATGGTTATCTGTATCACTTCTTGTAGATGCACAAGGAGCAGCTGGTCAGGCTCTTGTTGCAAGTTTCTTGGCCAAGGGCGACTACAATACTGTAAAAGAAGTAACTTACTTTGCTTTAAAGATTGGAGTACTCACTGGAGTCATGTTAGCTATAATTTTGGGTACCTCTTTTGGTTCTCTAGCAACCCTTTTCACTCAAGACATTGAAGTCTTAGGTATTGTTAAATCTGGTCTACTGTTTGTGAGTGCTAGCCAACCTTTAACTGCTTTGGCTTATATCTTTGATGGACTGCATTATGGAGTTTCAGACTTCTCCTTTGCTGCTTGTTCTATGATGTTAGTGGGTGCAATCTCTTCTACATTCTTGCTTTTAGCTCCTTCAGTCATTGGTATACAAGGAATCTGGTATGGTTTAGCTCTTTTCATGGGCCTCCGAACAATTGCCGGAATTATGAGATTATTATCAAAAGATGGACCATGGTGGTTCTTGCAACTAGACAACCACAAATTGAAGGTGGGTTAA 1521 0.4057 MATQIGGSLVCGVAIEGVVKRTKLNNEVGKCNFHFRTATERRAWNSIRILHKKVVSFDNFVRHCGLVANEPISDVGLSHFDVHNDDDDDSALSENGILINKKNFVFDGVNLENKPKVPSVQTELIMLSIPAIAGQAIEPLAQLMETAYIGRLGVLELASAGVSMSLAMFFGSRLFLIMVGISSDSPMRILSERFLSLRAIGAPAVVISLAVQGIFRGFKDTRTPVQCLGFGNLAAVFLFPVLIYNFNMGVAGAALSTVISQYIVATLMIWSLSKRTKLSIPNIRSLPFGGYLRSGGFLLGRTLASVMTITLSTTMAARLGPLATAAHQICLQVWLSVSLLVDAQGAAGQALVASFLAKGDYNTVKEVTYFALKIGVLTGVMLAIILGTSFGSLATLFTQDIEVLGIVKSGLLFVSASQPLTALAYIFDGLHYGVSDFSFAACSMMLVGAISSTFLLLAPSVIGIQGIWYGLALFMGLRTIAGIMRLLSKDGPWWFLQLDNHKLKVG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00329 506 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 41 166 IPR044644 -
Aip05g00329 506 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 166 499 IPR044644 -
Aip05g00329 506 Pfam MatE 310 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip05g00329 506 Pfam Polysaccharide biosynthesis C-terminal domain 195 295 IPR029303 -
Aip05g00329 506 PANTHER PROTEIN DETOXIFICATION 41 166 - -
Aip05g00329 506 PANTHER PROTEIN DETOXIFICATION 166 499 - -
Aip05g00329 506 TIGRFAM matE: MATE efflux family protein 178 468 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00329 Aip-Chr5 3693946 3697625 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00329 K03327 - qsu:112009074 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00329 05 3693946 3697625 Aip05g00329 05 3693946 3697625 ECH