Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00298 ATGGCGGCGCCGAGCATAAGGCCTTTGCCGGAGGCCGTTCGCAGTTCAGTGCGTTCCGGCATCTTCTTGTTCGATTCCACCCGCGTCGTCGAGGAACTAGTTTTCAATAGCCTTGATGCTGGTGCCACAAAGGTTTCTGTGTTTGTTAGCATTGGGAACTGTTACGTAAAAGTAGTAGATGACGGAGGTGGAATTGCTCGAGATGGACTTGAATTGGTGGGAGAAAGATACGCAACATCAAAACTTCGTAATTTGGATGACTTGAATACCACCAGCGGAAACTTTGGTTTTCGTGGGGAAGCTTTAGCTTCCATTTCCGAAGTCTCTTTGTTGGAAATTGTGACAAGAACATACGGAAGGCCCAATGGATATAGAAAAGTATTGAAGGGGTGCAAATGCTTGTATCTTGGTATTGATGATGATAGGAAGGAAGTTGGTACAACAGTTGCTGTCCGCGATTTATTTTACAACCAACCAGTTCGGAGGAAATACATGCAATCCAGTCCCAATAAGGTGCTGCAATCAATCAAGAAATGTGTACAGCGGCTTGCTCTTGTGCGTCCAAATGTTTCCTTCAAAGTTATCGATGTTGAAAGAGATGATGAGCTTTTCTGCACACAAGTTGCTTCTTCTCCACTAGCACTTTTGACCAGCGGCTTTGGGGAGGAGGTATCAAGCTTTCTTCAAGCTTTAGAAGTTGAGAATGATATCATAAAGCTATCTGGATATGTCTCTGGCCCTTGCAATGCTTTGAATATGAAGGTGATTTATATTTCGCATTTTGTTAGCAGTGGCCCAATTCATAAGCTTCTGAGTCAATTGGCTAATAGGTTTGAGCATCTGAATTCATGGAATACTAATAATGAGTTCGAAAACAAGAAGAAAAGTAGGTCTCAACCATGTCCAGCTTATATCTTGAATATAAGTTGCCCACGTTCTTTCTATGATTTGACATTTGAACCCTCAAAAACTTGGGTACAATTCAAGGATTGGGATTCTATACTCAACTTCATTGAGAAGGTCATAAAAGAATGCTGGGAGGAAAACGTAGATTGTGGAGAGTCCTTCAATCAGTCCACTTACATGGTACATGAAGATCAACCGTGGGAAGATCTCAACATTCTTCCAACAGAAGCAGATAAATCAAAATTTGGAAGCCATACTAAGAATTCCCAAGAACTCTCTGTTTCCACTTCAGGCAAGCTAACCGAAGATGAATATCATCAATCTGACAGGGAAGATGTTAGAACCTCTCTTGGTTACTTGTGTCAAGGAACTGAAATATTGAGAGAGAAACAAAACAAGAGAGACTTCTCTTATCAGACTCTTTTTTCTGGAAATTTAGTGGATGATTCATATGCCAGATGCATGCCAACTGTTGGAAAGCATAAGAGTTTATTGATGTATGATAAGAATGGTCAATCACTAGGAGATTACTTTTCAGATGATAATGTTCCTAGCGCAGAAATTTTATTTGATAATGTACCTTTTGATGCACCAAGTTCTTCAAAGGGAAGAAAATTCCGTGCTGTAGGAGCTGATATGATCAACGAATCATTTGAAGACTGCTTACTTAATGATAGCCATGGGTTTTGTAACAACGTAGAGGTAAATGAGGATTTTCAAAAGCCTTTTCTGAAAAGCTGTTCTATAAAAGGAAGTATCCTGCGAGAGAAGGCTCTCTTTACAAATGATGAACATGAACTCCACACTGATGGCTTTTGGAGAAAACAGACAAGGGAAGACTATGACAGTCTGAAGGACTATGGTGCTCAACGCTGTTCAAATGTTGTAAAAAAATTAAAATTGTCTAGAGACTGTGATTTTTTCTCTAGAGCAGTGGCTGAAGATCTTCCATATTCAGACTATTCAGTAGCACAAACAATGAACTCTGGGACTGTTGATCAGCTATTTACTTCTGAATGGCATTCTGTCTATCAAGAAGCCTCATCTCCAGCCAGTGCATGGGGTGGTGATCGTGCAGCTGATATTAATGACCTTGGACTTCATCGTACAATACTTACTGTCGAGGAAGAAAATGACTGTGACTTTGTCTACGATATTTCAAGGGATGCCAAACGAAATGGCTTTGAATTTACTGATGCTATTGATTTGGAAACGATATTCGACACAAAGGTTGACTGGCCTGATCGTGGTCCTAAATATTCTACTAAAAAAAGGCCAGATGTTTTATTTGAGGAATCTGAGTGTTTGTTGCCTGATACATGTGTTGAAAAGTGCAAAAGCCATGACAAGAACAAAAGCAGGATGGATCATTCGAGACATCCAGCATTGAACAAGAATAATGAAAGATCTAGAAGAAGCTCTTCAGCTCCACCATTCCATAAAAGGAAAAGGAGGTTTGTATCTTTAAATCAACCATCAGAAATGATAGCCAAAAGGCCTACTGCCCAAGCCTCCAATCCTGCTTTCAACCATCCATCAGGAATGATAGCCAAAAGACCTACTGGCCAAGCCTCCAATCCTGCTTTCAACCATCGAGCTCTTGTTGACCATTTCTCTAGCTACTCAACTGTTGGGAATAATTTTTCACTGACCTCTTCAAATTATCCTGATCATAGATCTAATGTGAAACAGAGATCAGATGCTCTGGGAGATGCACATTGTAATGACAACAAGGAGATTGATGGGTTTGATAGTTTCAACATTCAGAACAATGCTCCAGTCAGAGAGTTGTTCTCAAGGGAAGCACAAGATTCTATAGATCAGGGGATTAAATGGAGGACATGCTCACCTGAAATTCCAAAAAACAATAAAGTGGTTGAAGTTCAAAGTCAAAACAATATACTTGATATCTCTTCGGGATTTTTGCATCTTGCTGGAGATTCATTAATACCTGAAGCAATCAGTAAGAAATGCCTTGAAGATGCTAAAGTTCTCCATCAGGTGGATAAAAAATTCATTCCAGTTGTGGCTGGTGGAACCCTTGCTGTTATTGATCAGCATGCTGCAGATGAAAGAATCAGACTGGAAGAATTGCGGCAAAAGGTATTATCTGGAGAAGCAAAAGGAATAACCTATCTGGATGCTGAACAGGAACTGGTGCTGCCAGAGATTGGTTATCAACTACTTCATAGTTATAGCGAACAGATTAAAGATTGGGGTTGGATGTGCAACATTCATGTTCATTCTGAACCCTATAAAAGGAATCTGGATGTTCTCAACAGACAACCAATGGCCGTCACACTTATAGCGGTTCCTTGTATTTTAGGTGTCAACTTAAATGATGTTGATCTTTTAGAGTTTCTTCAGCAGCTTGCTGACACTGATGGATCATCAACTATGCCACCCTCTGTTATACGAGTCCTAAATTTGAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTACTACCATCAGAGTGTTCCCTTATAGTTGAAGAGCTAAAGCATACGTCACTTTGTTTCCAATGCGCTCATGGGCGACCGACAACTGTTCCTCTTGTCAACTTGGAGGCATTGCATAATCAGATAGCCAAGCTTGGGCAAATGAATGGCTGCTCAGATGATAAGTTTCATGGATTACAAAGGCACAAAGTATGTATTGAACGCACAGCAGAGCGTTTATCTTCTGCTAGAGGAACCTGA 3612 0.4042 MAAPSIRPLPEAVRSSVRSGIFLFDSTRVVEELVFNSLDAGATKVSVFVSIGNCYVKVVDDGGGIARDGLELVGERYATSKLRNLDDLNTTSGNFGFRGEALASISEVSLLEIVTRTYGRPNGYRKVLKGCKCLYLGIDDDRKEVGTTVAVRDLFYNQPVRRKYMQSSPNKVLQSIKKCVQRLALVRPNVSFKVIDVERDDELFCTQVASSPLALLTSGFGEEVSSFLQALEVENDIIKLSGYVSGPCNALNMKVIYISHFVSSGPIHKLLSQLANRFEHLNSWNTNNEFENKKKSRSQPCPAYILNISCPRSFYDLTFEPSKTWVQFKDWDSILNFIEKVIKECWEENVDCGESFNQSTYMVHEDQPWEDLNILPTEADKSKFGSHTKNSQELSVSTSGKLTEDEYHQSDREDVRTSLGYLCQGTEILREKQNKRDFSYQTLFSGNLVDDSYARCMPTVGKHKSLLMYDKNGQSLGDYFSDDNVPSAEILFDNVPFDAPSSSKGRKFRAVGADMINESFEDCLLNDSHGFCNNVEVNEDFQKPFLKSCSIKGSILREKALFTNDEHELHTDGFWRKQTREDYDSLKDYGAQRCSNVVKKLKLSRDCDFFSRAVAEDLPYSDYSVAQTMNSGTVDQLFTSEWHSVYQEASSPASAWGGDRAADINDLGLHRTILTVEEENDCDFVYDISRDAKRNGFEFTDAIDLETIFDTKVDWPDRGPKYSTKKRPDVLFEESECLLPDTCVEKCKSHDKNKSRMDHSRHPALNKNNERSRRSSSAPPFHKRKRRFVSLNQPSEMIAKRPTAQASNPAFNHPSGMIAKRPTGQASNPAFNHRALVDHFSSYSTVGNNFSLTSSNYPDHRSNVKQRSDALGDAHCNDNKEIDGFDSFNIQNNAPVRELFSREAQDSIDQGIKWRTCSPEIPKNNKVVEVQSQNNILDISSGFLHLAGDSLIPEAISKKCLEDAKVLHQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRQKVLSGEAKGITYLDAEQELVLPEIGYQLLHSYSEQIKDWGWMCNIHVHSEPYKRNLDVLNRQPMAVTLIAVPCILGVNLNDVDLLEFLQQLADTDGSSTMPPSVIRVLNLKACRGAIMFGDSLLPSECSLIVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLGQMNGCSDDKFHGLQRHKVCIERTAERLSSARGT 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00298 1203 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 4 1161 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Aip05g00298 1203 SUPERFAMILY DNA mismatch repair protein MutL 964 1156 IPR037198 -
Aip05g00298 1203 MobiDBLite consensus disorder prediction 388 403 - -
Aip05g00298 1203 Gene3D - 5 210 IPR036890 -
Aip05g00298 1203 CDD HATPase_MutL-MLH-PMS-like 13 195 - -
Aip05g00298 1203 Gene3D - 219 351 IPR014721 -
Aip05g00298 1203 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 27 203 IPR036890 -
Aip05g00298 1203 SMART MutL_C_2 966 1125 IPR014790 GO:0005524|GO:0006298
Aip05g00298 1203 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 120 - -
Aip05g00298 1203 SMART DNA_mis_repair_2 216 347 IPR013507 GO:0005524|GO:0006298|GO:0030983
Aip05g00298 1203 Gene3D - 1107 1168 IPR042120 -
Aip05g00298 1203 Gene3D - 961 1042 IPR042120 -
Aip05g00298 1203 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 4 1161 IPR028830 GO:0006298
Aip05g00298 1203 MobiDBLite consensus disorder prediction 802 827 - -
Aip05g00298 1203 MobiDBLite consensus disorder prediction 381 409 - -
Aip05g00298 1203 Pfam DNA mismatch repair protein, C-terminal domain 220 345 IPR013507 GO:0005524|GO:0006298|GO:0030983
Aip05g00298 1203 MobiDBLite consensus disorder prediction 749 789 - -
Aip05g00298 1203 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 96 102 IPR014762 -
Aip05g00298 1203 MobiDBLite consensus disorder prediction 749 769 - -
Aip05g00298 1203 SUPERFAMILY Ribosomal protein S5 domain 2-like 200 347 IPR020568 -
Aip05g00298 1203 Pfam MutL C terminal dimerisation domain 965 1125 IPR014790 GO:0005524|GO:0006298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00298 Aip-Chr5 3197814 3205740 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00298 K08739 - gmx:100788019 1498.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00298 05 3197814 3205740 Aip05g00298 05 3197814 3205740 ECH