Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00241 ATGGGGTTGGTTAAAACCTGCGAAGAAGTCACACATTCTCGGCCTCTGTTCTTGACGATCTACACAGTTGTCATCGTTGGCCTCGTCGTTTCCACATGCTACGTCTTCTCCGCTATTTACTCTGCCAACCCTTCTTCACCTGATTCCTCTTCCTCCACATGGTTCTCTTTGTCTTCTCAACCTTCCTCTCCCGTTTCAGATGAGGGTCGTGGTCCTACAGATCAGACACTCAACTTTTCTAAGTCAGAAACTGTGCATGATGTGCACCCTTCAACCCCAGAAACACAAAAAGTATTATGGAAAAGACCTGTTTTGGATGTTCCACCACCGCCTCACCCTAAAAAGATGCCACCTTTGGAGGATTTCCGACTGACCAAAGAACTGATTCAGCAAAGAGTGAAAGATAACATCGTAATAGTGACTTTTGGGAATTATGCATTCATGGACTTTATTATGACTTGGGTTAGACACCTGGATGATCTTGGAGTCTCTAATTATCTTGTCGGTGCAATGGACACCAAAGTGTTGGAGGCACTGTTTTGGAAAGGGGTTCCAGTATTTGACATGGATAGCCATATGAGCACAGTGGATGTTGGCTGGGGTTCTCCAACATTTCATAAGATGGGGAGAGAGAAAGTTATTCTAATAAACTCAATACTTCCTTTTGGTTATGAACTATTGATGTGTGACACTGACATGGTTTGGTTGAAGAACCCCCTTCCATATCTTGCTCGTTATCCTGAAGCAGATGTATTGACGTCTAGCGATCAAGTTATACCAACAGTTGTTGATGATAGTCTGGAAGTTTGGCAAGAAGTCGGTGCTGCCTACAACATTGGAATCTTTCATTGGAGACCAACAAAGTCTGCAAAAACATTGGCTTTGGAATGGAAAGAACTGGTTCTAGCTGATGAAAAGATATGGGATCAGACTGGTTTTAATGATATTGTTCACAGACAGTTAGGACCTTCTGTAGATGAAGACAGTGGGCTTGTTTATGCTTATGATGGAAATCTAAAGCTGGGAATTTTACCGGCTAGTATCTTCTGTAGTGGCCACACATATTTTATACAGGCTATGTATCAGCAACTCAGGTTGGAACCATATGCAGTGCACACAACATTTCAATTTGCAGGGACTGAAGGAAAGCGCCACCGACTGAGAGAAGCCATGTTCTTCCGTGATCCACCAGAATACTATAATCCTCCTGGAGGATTCTTGTCATTTAAGCCATCTATTCCAAAAAGCTTGTTGTTAAGTGGGAATCATACTGTTGGATCACATTTTACTCTTGTTAATTACCAAATAAAACAGATTAGGACAGCACTTGCTATTGCTTCCATTCTGAACAGAACACTGGTCATGCCTCCAATATGGTGCAGGCTTGATAGGCTGTGGTTCCCCCATCCTGGCGTTTTAGAGGGGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTATTTGAGGTGAATGTCATGTTGAAAGAACTCCCCGAGGAAGAGTTTGGCCCTCGAATAGATATTAGAGAGTACTCATTATTTGATAATCCCTCTCTGCCGCCTGAGGTTAAAAGATCATGGCTTGATGTTCAGCTCTGTAAAGAAGGCAGCCAAGATTGCAATGCATCAGATAATACCATTGGGGGAGTACTTAAATTTCCAAAGCATAGCAATGAAGAGATGTACCAGAAAGTGTTCCCGTCATTCAAGGATGTAAAAGTCATTCAGTTCAGTTCGATGCAAGATGCTTTCGCAGGATTCACCGACAAGGAAAGGGAAGAAAAATTCCGAAAACGCGTCAAACGGTATTTAGGCATATGGTGCTGTGTGTTGGATCACACCCCCGGTCACATTTATTATGACATGTACTGGGACGAGAAACCTGGATGGACGCCGCTCCCTCCTCAAACTTCTGCAGATGATCATCCACCTTGTGATGTGAAAATGAGAACATGGGTAGCTTTTCCTTTTCAATTGCTCCTAAAGCATATAACAAGATGGGCCTCTCAAAATTTAGCCTTTCTTCCACCAAGAAGATCACTATCATCCAATTCATTTTCTTCACAGAACTACCATAAGGGAAGGTTCAGCAATTTTAAGGGGCAAAGAGATTTCATTCTATCAAATTCTCGTCCTCTGTTGTCATCTTTTGGTCATTGTTTTTCCACTGCCATTCAACTGTTCGAGGAAATGCCACAAAGGAGCTTTTGTGTCAATAATGTTCATTTTGGATTAGTTCTTGATTACATTAGATTGTCCCTCAAAAAACCAAGAACTGTGACTGCCTATGTTGCTCACTGTGCTTCCTTAAAAATAGGTGCTCTAGGTCACCTACCTATTTCAACATCTCTACTCACTGTTTATTCTAAGGCTGGAGATTTCAAATCCTCAAGAGATTTGTTTGGTGAGATTCATAACAGAGATATCATAGCTTGGAATGCCATTGTTGCAGCATGTCTTGAAAATAACTGTTATAGTAGAGCAATGGAATTCTTAGAGGAAATGAATAAGGCTCAAATTGGGTTTGATTCCACCACTCTATTGCTTATGGTATCAGTTTCACTCCACATGAAAAATTTTGAACATGGACAGGCAATTCATTGTTTGAGTGTAAAATCTGGGATGCTTGTGGATATCAGTCTAGGTAATGCTTTAACTGATATGCATGCAAAGTGCGGCGATCTAAGCTCCGCTGAGAGTCTATTTGAAGAGATGGAATATAAAGATGTTGTTTCATGGAATTCAATAATGAGAGGAAGCCTTTACAATAGTGATCCAGAGAAATCACTATATTACTTCAAAAGGATGACTTGTGCTGGAGAAACAGCCGATTGCATTGGTCTATCTTGTGCTATTTCGGCTTCTTCAAGGTTGGGAAAGTTGGCTTTTGGCCAGTCCATTCATGGGCAGGGAATCAAACTAGGTTACAGGGACAGATCACATGTTTCATTTTCCAACTCTCTCATTTCGTTGTATTCACAAAGTGGCAACATCAGCGACGCTGAGACAGTATTCAGGGAAATAGCACAGAAAGATGTCGTTTCCTGGAATGCAATGATGGAAGGATTTGCTTCAAATGAAAAAGTTAATGAAGTATTTGATCTTCTGCTTGAAATGCAAACAACAGGATCTTTCCAACCTGATGTTGTAACATTTACCACCATACTTCCACTATGTGCAGAGCTTCTGCTCTCCAAAGAAGGAAGAACTATCCATGCATTCGCAATTCGACGACAGATGGTACCTGATCATCTTCCTATGCTGAACAGCCTGATAGACATGTACTCAAAGTTCAACCTTGTGGAGAAAGCCAGGATCTTGTTCAATTCTGCCTCACAGAGAGATTTGGTATCATGGAATGTAATGATATCTGGCTATTCCCAAAACAGTTATTCTGAGGAAGCTCGAGATTTGTTCAGGGAGTTGCTAAACCGGGTTCCAAATTGCAGTCCTTCAACTGTTTTTGCTATTCTTTCTTCCTGTGATTCCCTTGATAGTCTCCACTTTGGAAGATCAATTCACTGCTGGAAGTTAAAATCTGGATTTTTGAACGACATTCTTCTTGTAAATTCTCTCATGCACATGTATATCATTTGTGGTGACCTGAAAGCTGGTTTCTCAATTTTGCAAGAGAACTCTGCAGTTGCAGATATCGGTTCATGGAACACTCTTATTGTAGGTTGTGTAAGAGGTGACCATTTTCAAGAGGCTTTAGAAACTTTCAGTTTGATGAGGCAATTAGCTGCTTTCAACCATGACTCCATAACCATTGTGGGTGCCTTGTCAGCTTGTGCAAACCTAGGACTACTCAGCCAAGGAAAAACTCTCCATGGTCTTACCCACAAATCTCCTTTGCAGTCAGATACTCGTGTTCAAAACTCGCTAATTACCATGTATGGCAGATGCGAGGACATTGACAGTGCCAGAGTAGTCTTCAAATTCTGCTCTGTTCCCAACCTATGCTCATGGAACTGCATGATCTCAGCTCTATCTCATAATAAAGAAAGTAGAGAAGCATTGGAATTTTTTCGTGATCTTCAGTTCAAACCAAATGAATTCACCATTGTGAGTATTCTGTCAGGTTGTTCTCAACTTGGCATCCTAAGACATGGAAAACAAGTTCATGCTCATGTGTTTAGGTCCAGAATTCAATGTAATTCTTTCATAGCAACAGCTCTTGTAGACTTGTACAGCAACTGTGGAAGACTGGACATTGCTCTCAAAGTATTTAGACACTCAGAGAAGTCAGAATCAGCTTGGAACTCCACGATTGCTGCATATGGATATCATGGAAAAGGAGAGCAAGCAATTGAACTCTTCCATGAAATGTGCAAATCAGGAACAAGGGTGACAAAGAGCACTTTTGTTAGCCTATTATCTGCTTGCAGCCATTCAGGACTAGTTAACCAAGGTCTTTGGTTCTACAACCGGATGTTAGAGGAATACGGCGTGGAACCAGAGATTGAGCATCAAGTTTATGTGGTCGACATGCTAGGTAAATCAGGTAGGCTTGATGAGGCTTATGAGTTTACAAAAGGCTTGGAATCAAAGGCCACCTCAGGTGTATGGGGAACACTTCTAAGTGCATGCAACTATCATGGAGCAATCAAGTTGGGGAAACAAGTAGCTCAACATCTCTTTGAAGTGGATCCTCAGAATGTTGGATATTACATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCCACTGAATTGAGAGAGTATGTACAGGACCAAGGATTAAAAAAGGCTGCAGGCTATAGCCTTATTGATGTTGGCTTGGGACAGGAGAGTGCTTAA 4818 0.4143 MGLVKTCEEVTHSRPLFLTIYTVVIVGLVVSTCYVFSAIYSANPSSPDSSSSTWFSLSSQPSSPVSDEGRGPTDQTLNFSKSETVHDVHPSTPETQKVLWKRPVLDVPPPPHPKKMPPLEDFRLTKELIQQRVKDNIVIVTFGNYAFMDFIMTWVRHLDDLGVSNYLVGAMDTKVLEALFWKGVPVFDMDSHMSTVDVGWGSPTFHKMGREKVILINSILPFGYELLMCDTDMVWLKNPLPYLARYPEADVLTSSDQVIPTVVDDSLEVWQEVGAAYNIGIFHWRPTKSAKTLALEWKELVLADEKIWDQTGFNDIVHRQLGPSVDEDSGLVYAYDGNLKLGILPASIFCSGHTYFIQAMYQQLRLEPYAVHTTFQFAGTEGKRHRLREAMFFRDPPEYYNPPGGFLSFKPSIPKSLLLSGNHTVGSHFTLVNYQIKQIRTALAIASILNRTLVMPPIWCRLDRLWFPHPGVLEGSMTRQPFLCPLDHVFEVNVMLKELPEEEFGPRIDIREYSLFDNPSLPPEVKRSWLDVQLCKEGSQDCNASDNTIGGVLKFPKHSNEEMYQKVFPSFKDVKVIQFSSMQDAFAGFTDKEREEKFRKRVKRYLGIWCCVLDHTPGHIYYDMYWDEKPGWTPLPPQTSADDHPPCDVKMRTWVAFPFQLLLKHITRWASQNLAFLPPRRSLSSNSFSSQNYHKGRFSNFKGQRDFILSNSRPLLSSFGHCFSTAIQLFEEMPQRSFCVNNVHFGLVLDYIRLSLKKPRTVTAYVAHCASLKIGALGHLPISTSLLTVYSKAGDFKSSRDLFGEIHNRDIIAWNAIVAACLENNCYSRAMEFLEEMNKAQIGFDSTTLLLMVSVSLHMKNFEHGQAIHCLSVKSGMLVDISLGNALTDMHAKCGDLSSAESLFEEMEYKDVVSWNSIMRGSLYNSDPEKSLYYFKRMTCAGETADCIGLSCAISASSRLGKLAFGQSIHGQGIKLGYRDRSHVSFSNSLISLYSQSGNISDAETVFREIAQKDVVSWNAMMEGFASNEKVNEVFDLLLEMQTTGSFQPDVVTFTTILPLCAELLLSKEGRTIHAFAIRRQMVPDHLPMLNSLIDMYSKFNLVEKARILFNSASQRDLVSWNVMISGYSQNSYSEEARDLFRELLNRVPNCSPSTVFAILSSCDSLDSLHFGRSIHCWKLKSGFLNDILLVNSLMHMYIICGDLKAGFSILQENSAVADIGSWNTLIVGCVRGDHFQEALETFSLMRQLAAFNHDSITIVGALSACANLGLLSQGKTLHGLTHKSPLQSDTRVQNSLITMYGRCEDIDSARVVFKFCSVPNLCSWNCMISALSHNKESREALEFFRDLQFKPNEFTIVSILSGCSQLGILRHGKQVHAHVFRSRIQCNSFIATALVDLYSNCGRLDIALKVFRHSEKSESAWNSTIAAYGYHGKGEQAIELFHEMCKSGTRVTKSTFVSLLSACSHSGLVNQGLWFYNRMLEEYGVEPEIEHQVYVVDMLGKSGRLDEAYEFTKGLESKATSGVWGTLLSACNYHGAIKLGKQVAQHLFEVDPQNVGYYISLSNMYVAAGSWKDATELREYVQDQGLKKAAGYSLIDVGLGQESA 1605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00241 1605 Gene3D Tetratricopeptide repeat domain 1416 1596 IPR011990 GO:0005515
Aip05g00241 1605 Gene3D Tetratricopeptide repeat domain 1149 1274 IPR011990 GO:0005515
Aip05g00241 1605 Gene3D Tetratricopeptide repeat domain 718 866 IPR011990 GO:0005515
Aip05g00241 1605 Gene3D Tetratricopeptide repeat domain 1063 1147 IPR011990 GO:0005515
Aip05g00241 1605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1117 1147 IPR002885 -
Aip05g00241 1605 Gene3D Tetratricopeptide repeat domain 1275 1380 IPR011990 GO:0005515
Aip05g00241 1605 TIGRFAM PPR: pentatricopeptide repeat domain 1421 1451 IPR002885 -
Aip05g00241 1605 TIGRFAM PPR: pentatricopeptide repeat domain 1222 1247 IPR002885 -
Aip05g00241 1605 TIGRFAM PPR: pentatricopeptide repeat domain 1119 1147 IPR002885 -
Aip05g00241 1605 TIGRFAM PPR: pentatricopeptide repeat domain 1324 1349 IPR002885 -
Aip05g00241 1605 TIGRFAM PPR: pentatricopeptide repeat domain 1016 1050 IPR002885 -
Aip05g00241 1605 MobiDBLite consensus disorder prediction 45 91 - -
Aip05g00241 1605 PANTHER NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE FAMILY PROTEIN 2 646 - -
Aip05g00241 1605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1453 1488 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 813 839 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 1090 1112 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 885 911 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 784 810 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 1222 1248 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 1119 1145 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 1324 1348 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat 913 942 IPR002885 -
Aip05g00241 1605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 810 844 IPR002885 -
Aip05g00241 1605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 880 914 IPR002885 -
Aip05g00241 1605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1418 1452 IPR002885 -
Aip05g00241 1605 MobiDBLite consensus disorder prediction 45 95 - -
Aip05g00241 1605 SUPERFAMILY TPR-like 1082 1580 IPR011990 GO:0005515
Aip05g00241 1605 PANTHER ARABINOSYLTRANSFERASE XEG113 2 646 - -
Aip05g00241 1605 Pfam PPR repeat family 1420 1465 IPR002885 -
Aip05g00241 1605 Pfam PPR repeat family 1013 1059 IPR002885 -
Aip05g00241 1605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1014 1048 IPR002885 -
Aip05g00241 1605 Pfam E motif 1538 1596 IPR046848 -
Aip05g00241 1605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1219 1249 IPR002885 -
Aip05g00241 1605 Gene3D Tetratricopeptide repeat domain 867 967 IPR011990 GO:0005515
Aip05g00241 1605 Gene3D Tetratricopeptide repeat domain 977 1062 IPR011990 GO:0005515
Aip05g00241 1605 Pfam Nucleotide-diphospho-sugar transferase 163 387 IPR005069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00241 Aip-Chr5 2650056 2658285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00241 881 1599 Glycoside Hydrolase AT3G49170 30.245 2.71e-102 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00241 - - ahf:112800190 1849.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00241 05 2650056 2658285 Aip05g00241 05 2650056 2658285 ECH