Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00235 ATGGCGACTGAATCTGCCGTGAAAGGACCTCCGTCGAATAGTCCCGGTGATTCGTACATAGGAAGCTTCATAAGCTTGCTTTCCAAGAGCGAGATTCGTTACGAGGGCGTTCTCTATTTCCTCAACGTTCATGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAGAAAAGATGGTCCACAAATTCCTCCAAGTGAGAAGGTTTATGAATACATTCTTTTTCGAGGAAATGACATTAAGAATTTGCAGATCAAGTCTCCCCCAACATCTGCCAAATCAGAAGAGCAGATACATAATGATCCAGCTATTATACAATCACAGCTAAACTCTACAGCAGCCTCATTTGGTGGGAGAAATTCGACAGAATCTATTCAAAGGCAGGATAGTGTTGATATGTTTAGTAAAGCTATCCCTATTGGGTTGCTGTCACCTCAATCTGCAACTCAGCTAAACCCTTCAGATCAGTCTGCTGCTACTCAAGTTGCTGGTCATCCATCCTTTTCCACATCAATGTATTTGAACGGACACAGTGGGATATCAAGCAATAACTCTAATTCTCTGCTATATCCTGCTCTTCTTCAATCACCGTCAATGGTAGCATCACCTTTACCTTACCAAAGTTGGATGCAAACTCCGGAAACTGAGGTTCCTAACAAAGTGGGATGGACACCTTTATCAGACTATGGTCTTCCTGTATCTTCTACTAATACTTCTCTTGTAAATCAAACTCGCTCTCCATCTCCTAACCCTTTACAAATTTCTGATTCACTTGATGTTAATTCCCTCTTACCTACTAAGGCACCCATGCCATATCCTACGCCCATGACTTTTGATGGATCAAACATACATTCATTTTCTTCACCTCTCCAAGAAATAAATTCTATTGATAACCAAATAGCTGAAAAAATTTGCCCTGACCCAAGGTCAATTTATCTTGGACATGCCTTTCATCATCCTTCTTCATTTGTAGGTTACAGTTCAGGTCCCTTGCCAATACCTCCATCTTTGTTAACTCCAGATCAATTTGCACATCCCAGAGAAAATGTATCTCCTTTAACACAGAATTTGACCCCTAATCAGAAAGATATGGGTTCTTTGATTCCAACATCTTCTAATTCCTCTGTATTGATGCCTTCTATAGTGTCTCAAGCACCACTACTGCCATTACCAACTTTAGTGCCAAAGCCTCACTCAATAGCTTCCCAGTTCAACGAAGAGTTTGATTTTGAGGCCATGAATGAAAAATTCAATAAAGATGAAGTATGGGGTTCTCTTGGAAAGGCAACTATGAACATAGAAGGAGTGGATGACAATGCTTCTTCTATCAGTTCAGGTGACAAAGACAGTCAAGGGAAGACACCAAGTCCTAAGTCTGCATACAAGAAAGATGACTTTTTTGACACAATTTCCTGCAACTCTGCGAGTAGTGGAAGGAATGGACAACACCGTTTATCTGAGAGAATAAAACTGGATACCGAGACGTTTGGCAATTTCCAACACAGGCCTAATTTTGGCTATGGTGGTGGTCGCGGTATGAATTTCAGAGGCTCAAATAATTGGGGAAGAGGTTATGGTTATGGTAGGAGAGGACGTGGCCCAAACTTCCATCGTTTCTAG 1635 0.4147 MATESAVKGPPSNSPGDSYIGSFISLLSKSEIRYEGVLYFLNVHDSTIGLKNVRSYGTEGRRKDGPQIPPSEKVYEYILFRGNDIKNLQIKSPPTSAKSEEQIHNDPAIIQSQLNSTAASFGGRNSTESIQRQDSVDMFSKAIPIGLLSPQSATQLNPSDQSAATQVAGHPSFSTSMYLNGHSGISSNNSNSLLYPALLQSPSMVASPLPYQSWMQTPETEVPNKVGWTPLSDYGLPVSSTNTSLVNQTRSPSPNPLQISDSLDVNSLLPTKAPMPYPTPMTFDGSNIHSFSSPLQEINSIDNQIAEKICPDPRSIYLGHAFHHPSSFVGYSSGPLPIPPSLLTPDQFAHPRENVSPLTQNLTPNQKDMGSLIPTSSNSSVLMPSIVSQAPLLPLPTLVPKPHSIASQFNEEFDFEAMNEKFNKDEVWGSLGKATMNIEGVDDNASSISSGDKDSQGKTPSPKSAYKKDDFFDTISCNSASSGRNGQHRLSERIKLDTETFGNFQHRPNFGYGGGRGMNFRGSNNWGRGYGYGRRGRGPNFHRF 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00235 544 PANTHER SCD6 PROTEIN-RELATED 12 540 - -
Aip05g00235 544 Gene3D - 11 94 - -
Aip05g00235 544 SUPERFAMILY Sm-like ribonucleoproteins 18 94 IPR010920 -
Aip05g00235 544 CDD LSm14_N 16 90 IPR025609 -
Aip05g00235 544 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 12 540 - -
Aip05g00235 544 Pfam Scd6-like Sm domain 19 92 IPR025609 -
Aip05g00235 544 MobiDBLite consensus disorder prediction 442 462 - -
Aip05g00235 544 MobiDBLite consensus disorder prediction 442 467 - -
Aip05g00235 544 SMART FDF_2 407 505 IPR019050 -
Aip05g00235 544 SMART LSM14_2 13 114 IPR025609 -
Aip05g00235 544 ProSiteProfiles DFDF domain profile. 401 437 IPR025762 -
Aip05g00235 544 Pfam FDF domain 408 503 IPR019050 -
Aip05g00235 544 ProSiteProfiles FFD box profile. 464 479 IPR025761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00235 Aip-Chr5 2539905 2544540 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00235 K18749 - gmx:102669894 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00235 05 2539905 2544540 Aip05g00235 05 2539905 2544540 ECH