Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00082 ATGTGTGTCTTACTCCCTGCACCCGCTGAGCCCCGGCGGGACGAGATGGACGCTCTTTTGGAACCACCGAGTACTCTTTCCAACACCCTAGATTCCGCACAATTGGTTCCTCCGTTCCCTAATCCGAACGACTCCTTCTCCGTAGAAACCCTAGCCTCCGACAACGCTCGTCCGTCGGCCGCGGCGGCGACACCTGCCACCGGCGATGATATCTATTCCGCCATTATAGGTAAGGAAGATCCGCTCGAGGATCTGGACCCGTCTTCCTCGTTTCGCATCTTTGACGACGATTTGTCTTCGTCGTTCACGGCGGCGCCGGCGCCGTTGTCGTCTTCGAAAGATTCCGATTCTTGGCTGTTCTCTGGAGACGCTGGTGATGAGCCTTCGATGAACGAGGACTCTGGTTCCGCGGTTGTACCTTCTAGAGTGGGAGCGGGGCTTTGGAATCTTGGTAACACATGCTTTCTAAATGCGATTGTGCAGTGCTTTACGCACACAGTGCCGCTAGTCCAGGGTCTTCGATCATGCATTCATTCTGCACCTTGCGACGGTGATGGTGATAGGTTTTGCGTCATTTGTGCCCTCCGTGAGCAGATTGAAAGCTCATTAGGAGCTTCAGGAGGAGTTCTTTCACCTTCAAAGCTTGTTGATAATTTGAACCATTTTTCATCCATGTTTAGAAGATACCAGCAGGAGGATGCCCATGAATTTATGCAGTGTGTCTTAGATAAGCTTGAAATGTGTTTTAAAGATTTGAAAAAGAATAGTAAGAGTTTTGAAGATGATAATCTAGTAGAGAAGGTATTTGGAGGTCGATCCCTTAGTAAGCTGCGTTGCTGTAACTGTGGCCATTCTTCTGACACTTATGAGCCACTGATTGACCTGAGTTTGGAGATAGATAATGTAGATACACTTTCAAGTGCTCTGGAGTCATTCACTATGGTGGAGAACATTGATGCTAAGTTTAAATGTGATAGCTGCAAGGAAGAAGTGTCAATGGAGAAGCAAATTATGCTGGATCAGGCTCCTTCAATTGCAACTTTTCATTTAAAGAGATTTAAGACAGATGGAACCTATGTTGAAAAGATTGATAAGCATGTAAATTTCCCACTGGAGTTGGACTTACAGCCTTACACCATTTCTCATCAAAACAATAATGTGCCATTGAAATATGAACTGTATGCAGTTGTTGTGCATATTGGGTTTTCATCTACTTCAGGACATTACTTTTCCTTTGTTCGCTCTGCACCAGATACATGGCATAAGTTGGATGATTCAAAGGTCACGATGGTCTCAGAAGAATCTGTCTTGTCTGAAGAGGCATACATACTGTTTTATGCGCGACAGGGTACACCATGGTTTTCAAGTATTATGGAACTAATGCCGTGCACAGGTCCAAGTACTTTGAATACATCTCCAAAGTCTGTTCTAGATACCATTGACAACAAATATACAGCAAATCCTGTTATAACTGCAAATACTGAAAGGAGCAAGGTTAGTGAGCCTGGCAGATTTTTGGAGCAGCAATTTCATTATTCTTGTCAAAAAGGACACGAGTTGCATGAGATCAGTGATGTTGGTGATACTTCTCATGACTGCAAGCAATCTCCTCCTAGGCCAAATTGTGTTGGTTTTAGTGGCTCTAATGTTTCCCTTAATACCCAAATGCCACTTCCAAATAATGCCATCCCAAATGTTGGTGGTTCATCTTTCAATGGAAATTCACCTATTGATGGTAGTCCTGATAAAAACAAGCACAGCGGGGAAGCTGTTGATATTGCTGTGAATGACAGTTTTCATCCCTTAACACCACCCAGCTCACCTCTATATACTCCAGATCAGAGTTACTATATTCCACGTGATCATTTGAAGTCAGAGAATCGCATCAGATGTAAAAGATCATTAAATACACTAGTGTTGGATTCTGAGAGACAAGAAGCTCTGAAATGTGTTAAGAAGATGTCTGGTTCAAGGAAAGAAGCATTGCTGCAGTTTGTTAGTCCAATCAGTGAACCCTCCAACAAAAGGAAAAGGAAGATTGATTCTTCACTGTGTAAGAAACGCAGCCCTCATAGTGCTTCCTCAAAATCAAACCATTTGCGCCCCGTGGCTGCAGGAATTTCTCGGTGA 2130 0.4399 MCVLLPAPAEPRRDEMDALLEPPSTLSNTLDSAQLVPPFPNPNDSFSVETLASDNARPSAAAATPATGDDIYSAIIGKEDPLEDLDPSSSFRIFDDDLSSSFTAAPAPLSSSKDSDSWLFSGDAGDEPSMNEDSGSAVVPSRVGAGLWNLGNTCFLNAIVQCFTHTVPLVQGLRSCIHSAPCDGDGDRFCVICALREQIESSLGASGGVLSPSKLVDNLNHFSSMFRRYQQEDAHEFMQCVLDKLEMCFKDLKKNSKSFEDDNLVEKVFGGRSLSKLRCCNCGHSSDTYEPLIDLSLEIDNVDTLSSALESFTMVENIDAKFKCDSCKEEVSMEKQIMLDQAPSIATFHLKRFKTDGTYVEKIDKHVNFPLELDLQPYTISHQNNNVPLKYELYAVVVHIGFSSTSGHYFSFVRSAPDTWHKLDDSKVTMVSEESVLSEEAYILFYARQGTPWFSSIMELMPCTGPSTLNTSPKSVLDTIDNKYTANPVITANTERSKVSEPGRFLEQQFHYSCQKGHELHEISDVGDTSHDCKQSPPRPNCVGFSGSNVSLNTQMPLPNNAIPNVGGSSFNGNSPIDGSPDKNKHSGEAVDIAVNDSFHPLTPPSSPLYTPDQSYYIPRDHLKSENRIRCKRSLNTLVLDSERQEALKCVKKMSGSRKEALLQFVSPISEPSNKRKRKIDSSLCKKRSPHSASSKSNHLRPVAAGISR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00082 709 MobiDBLite consensus disorder prediction 22 54 - -
Aip05g00082 709 Gene3D Cysteine proteinases 142 453 - -
Aip05g00082 709 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 146 161 IPR018200 GO:0004843|GO:0006511
Aip05g00082 709 SUPERFAMILY Cysteine proteinases 144 448 IPR038765 -
Aip05g00082 709 MobiDBLite consensus disorder prediction 670 709 - -
Aip05g00082 709 MobiDBLite consensus disorder prediction 22 65 - -
Aip05g00082 709 Pfam Ubiquitin carboxyl-terminal hydrolase 146 446 IPR001394 GO:0004843|GO:0016579
Aip05g00082 709 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 391 409 IPR018200 GO:0004843|GO:0006511
Aip05g00082 709 MobiDBLite consensus disorder prediction 687 701 - -
Aip05g00082 709 MobiDBLite consensus disorder prediction 105 136 - -
Aip05g00082 709 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 145 449 IPR028889 -
Aip05g00082 709 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 79 487 - -
Aip05g00082 709 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 79 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00082 Aip-Chr5 970456 974513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00082 140 448 Miscellaneous Gene Families AT4G31670 33.333 1.23e-48 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00082 K11855 - gmx:100808015 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00082 05 970456 974513 Aip05g00082 05 970456 974513 ECH