LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g03364	ATGTCCTTTTTGGTAATAACACATTGGGGTCCCAGAGCCCAGATTTTCGTTGGTCAAAAGGGTCCATCATTCATCTCTCAAGGCAATTTAGAAAGAAAGAATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTTGGGGGTCCTACAATGGCAGTCATTGCACTGAACATGTGTTTGAGGCTGACATTGTGTTTGTCTCCGTCAACACCCCAACGAAAACTCAGGGTCTTGGAGCCGGCAAAGCAGCCGATTTGACCTATTGGGAGAGCGCTGCTCGCATGATTGCTGATGTCTCAAAGTCAGACAAAATCGTTGTTGAGAAATCCACTGTCCCTGTCAAGACTGCTGAGGCTATAGAGAAAATTTTGACTCACAATAGCAAGGGAATCAAGTTCCAGATCCTGTCAAACCCGGAATTCCTTGCTGAGGGAACTGCAATCGAAGACCTTTTCAAGCCAGACCGTGTCCTTATCGGTGGCCGGGAGACCCCAGAAGGCCAGAAAGCTCTCCAAACATTGAAGGAAGTTTATGCTCACTGGGTCCCTGAAGAGAGAATCCTAACCACTAACCTGTGGTCTGCTGAGCTGTCTAAGCTTGCTGCCAATGCCTTCTTGGCGCAGAGGATTTCATCTGTTAATGCAATGTCGGCGCTTTGCGAGGCTACCGGGGCAAATATCCAGCAGGTGTCCTTTGCTGTCGGTACTGACACAAGAATTGGACCCAAGTTCCTCAATGCCAGTGTTGGATTTGGTGGATCCTGCTTCCAGAAGGATATCCTGAACCTTGTCTACATCTGCGAGTGCAACGGCCTTCCTGAGGTGGCCGAGTACTGGAAGCAAGTCATCAAGATCAATGATTACCAGAAGAGCCGGTTCGTGAACCGTGTAGTCTCATCCATGTTCAACACTGTCTCAAGCAAGAAGGTTGCCATTCTTGGATTCGCCTTCAAGAAAGATACCGGTGACACAAGGGAGACCCCGGCCATTGACGTGTGCAAGGGGCTACTTGGCGACAAGGCCAACCTAAGCATATATGATCCACAGGTAACCGAGGACCAAATCCAGAGGGATCTGTCGATGAACAAGTTCGATTGGGACCATCCGATCCACTTGCAGCCGACTAGTCCTTCTACCGTGAAGAAAGTGAGTGTGGTTTGGGATGCATATGAAGCCACAAAGGATGCACATGGAATCTGCATTCTTACTGAGTGGGATGAGTTCAAGACCCTTGATTACCAGAGGATCTATGAGAACATGCAGAAGCCAGCATTTGTTTTTGATGGAAGAAACATTGTTGATGCTGATAAGTTGCGTGATATTGGATTCATTGTTTACTCAATTGGTAAGCCACTTGATGCTTGGCTCAAGGACATGCCTGCTGTGGTGGCATAG	1392	0.4806	MSFLVITHWGPRAQIFVGQKGPSFISQGNLERKNGEDLLHWCWICWGSYNGSHCTEHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKALQTLKEVYAHWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANIQQVSFAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVSSKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPSTVKKVSVVWDAYEATKDAHGICILTEWDEFKTLDYQRIYENMQKPAFVFDGRNIVDADKLRDIGFIVYSIGKPLDAWLKDMPAVVA	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g03364	463	SUPERFAMILY	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	297	445	IPR036220	-
	Aip04g03364	463	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	55	196	IPR036291	-
	Aip04g03364	463	PANTHER	UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE	53	461	IPR028356	GO:0003979
	Aip04g03364	463	SUPERFAMILY	6-phosphogluconate dehydrogenase C-terminal domain-like	192	291	IPR008927	-
	Aip04g03364	463	TIGRFAM	NDP-sugDHase: nucleotide sugar dehydrogenase	54	430	IPR017476	GO:0016616
	Aip04g03364	463	Pfam	UDP-glucose/GDP-mannose dehydrogenase family, central domain	192	286	IPR014026	GO:0016616\|GO:0051287
	Aip04g03364	463	SMART	UDPG_MGDP_dh_C_a_2_a	310	434	IPR014027	GO:0016616\|GO:0051287
	Aip04g03364	463	Gene3D	-	191	222	-	-
	Aip04g03364	463	PIRSF	UDPglc_GDPman_dh	50	449	IPR017476	GO:0016616
	Aip04g03364	463	Gene3D	-	50	190	-	-
	Aip04g03364	463	PIRSF	UDPglc_DH_euk	48	462	IPR028356	GO:0003979
	Aip04g03364	463	Pfam	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	310	433	IPR014027	GO:0016616\|GO:0051287
	Aip04g03364	463	Pfam	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	54	167	IPR001732	GO:0016616\|GO:0051287
	Aip04g03364	463	Gene3D	-	223	460	-	-
	Aip04g03364	463	PANTHER	UDP-GLUCOSE 6-DEHYDROGENASE	53	461	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g03364	Aip-Chr4	128016888	128019580	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g03364	K00012		-	gmx:548074	780.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip10g03068	10	127726486	127729469	Aip04g03364	04	128016888	128019580	PCT