Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02867 ATGTCTTCCCCAAGCAAGCGGCGAGAGATGGACTTAATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAGGAGTTTTATGTTTATTTCGATGGACCCAATGAAAGTCCTTATCATGGTGGTGTATGGAAAGTAAGAGTTGAGCTACCTGATGCTTATCCTTATAAATCTCCTTCTATAGGATTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGGTCAGTTTGTCTGGATGTTATCAACCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAAGTGTTCCTACCACAGCTTCTTCTGTATCCCAATCCATCAGACCCTTTAAATGGAGAAGCTGCCGCTTTACTGATGCGAGATCGAGCTAGTTATGAACAAAGGGTTAAGGAGTACTGTGAGAAGTATGCTAAAGCTGAAGATGTAGGAGCTGCACCAGAAGAGAAATCAAGTGATGATGAGGAAATGAGTGAAGATGAATATGATTCAAGTGATGAACAGGTTGCTGGTAAAGCAGATCCTTAG 555 0.4108 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVYFDGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRASYEQRVKEYCEKYAKAEDVGAAPEEKSSDDEEMSEDEYDSSDEQVAGKADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02867 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Aip04g02867 184 MobiDBLite consensus disorder prediction 149 184 - -
Aip04g02867 184 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Aip04g02867 184 SMART ubc_7 4 148 - -
Aip04g02867 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Aip04g02867 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Aip04g02867 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Aip04g02867 184 Coils Coil 132 152 - -
Aip04g02867 184 CDD UBCc 7 143 IPR000608 -
Aip04g02867 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Aip04g02867 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02867 Aip-Chr4 120026308 120029823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02867 26 178 Miscellaneous Gene Families AT1G17280 21.765 4.34e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02867 K10576 - gmx:100804969 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02867 04 120026308 120029823 Aip04g02867 04 120026308 120029823 ECH
Aip04g02867 04 120026308 120029823 Aip02g00086 02 1551567 1554544 PCT