Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02459 ATGGTGAAGATGGGTACCAAAAAGTTGAGTTTTTTGCTGTGTGTTTGGGTTTTGGTATTTGGGTTTTGTTATGGTAGGTTTGTGGTGGAGAAGAACAGCTTGAAGGTGACTTATCCGAAATCGTTGAAGGGTAGTTATGAGTGTGCAATTGGGAATTTTGGAGTTCCAAAATATGGAGGAGTAATGGTTGGTTCTGTGGTGTACCCAAAGGCGAATCAGAAGGGTTGCAAGAGCTTCAGTGATGTTGATATTTCGTTTCAAACCAAGCCTGGAAGCTACCCCACCTTTGTCCTTGTTGATCGTGGTGATTGCTTCTTCACTTTGAAGGCATGGAATGCACAGAATGCTGGAGCCGCAGCTATTCTTGTAGCTGATGACAGGTCAGAAACATTGATCACAATGGACACACCTGAAGAAATGAATGCTGGAAAAGGCGATTATGTCGAGAAGATTACTATTCCGTCTGCCCTCATCAGCAGATCACTTGCAGATAAAATCAAGGACGCTCTCTCAAATGGTGAGATGGTTAACATTAATCTTGATTGGACCGAGGCTCTTCCACATCCTGATGAGAGAGTCGAGTATGAGTTGTGGACAAATAGCAATGATGAGTGTGGGCCGAAATGTGACAATCTAATCGAGTTTCTGAAGGACTTTAAAGGCGCAGCACAGCTACTTGAGAGGAAAGGGTTTACTCAGTTCACCCCTCGCTATATAACTTGGTATTGTCCCGAAGCATTTCTTTTAACCAAGCAGTGCAAGTCACAGTGCATAAACCATGGAAGGTACTGCGCTCCGGATCCCGAGCAAGATTTCAGTAAAGGGTATGATGGCAAAGATGTTGTTATTCAAAATTTACGACAGGCTTGCTTCTATAAAGTGGCAAATGCAAGTGGAAACCCTTGGCAATGGTGGGACTATGTGACTGACTTTGCAATCCGTTGCCCGATGAAAGACAATAAGTTCACTGAAGAGTGTTCAGATCAAGTTATAACATCTCTTGGTGCGAATCTGAAGAAGATTAAGGAGTGTGTTGGTGATCCTCATGCTGATGTTGAAAACCCTGTTCTCAAGGCTGAACAGGATGCACAGATCGGAAAAGGCTCTCGTGGTGATGTCACTATACTGCCTACTCTTGTTATAAATGACAGACAGTATAGAGGTAAGCTGTCAAGAGCAGCAGTTCTCAAGGCAATCTGTGCTGGTTTCCAAGAGACTACTGAACCATCAATATGCTTAACTCAAGACATGGAAACAAATGAATGTTTGGAAAATAATGGTGGTTGCTGGCAAGACAAATCTGCTAACATTACTGCATGCCGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTACAAAATGTGAAATTTGTTGGTGATGGATATACACACTGTGAAGCTTCAGGAGCCTTGAGGTGCACAATCAACAATGGAGGTTGCTGGAAGGGAACCCAAGAGGGCAAGGTTTACTCAGCTTGCATTGATGACCACACGAAAGGTTGCAAGTGTCCACCTGGGTTCGAAGGCGACGGTATCAACAAATGTGAAGATATTGATGAGTGTGAAGAAAAATTGAAGTGCCAATGCCCACAATGCAAATGCAAGAACACTTGGGGAAGTTATGAGTGTAAATGCGGTAGCGGTTTGTTCTACTCACAAGAGAATGATGTTTGCATGGGTAAGTACACTGCTTCAATGTCGGGCGGGAACTTTATCGGAATGATCATCCTCGTTGCGGCTGTTGCTGGTATTGCTGGATATGCATTTTACAAGATTAGAATCCAGAGATATATGGATTCTGAGATAAGGCAAATCATGGCTCAATACATGCCCTTGGACAATCAACCTGAGGTCCCCAGTCAACTCCATCATGATATCTAG 1887 0.4356 MVKMGTKKLSFLLCVWVLVFGFCYGRFVVEKNSLKVTYPKSLKGSYECAIGNFGVPKYGGVMVGSVVYPKANQKGCKSFSDVDISFQTKPGSYPTFVLVDRGDCFFTLKAWNAQNAGAAAILVADDRSETLITMDTPEEMNAGKGDYVEKITIPSALISRSLADKIKDALSNGEMVNINLDWTEALPHPDERVEYELWTNSNDECGPKCDNLIEFLKDFKGAAQLLERKGFTQFTPRYITWYCPEAFLLTKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVIQNLRQACFYKVANASGNPWQWWDYVTDFAIRCPMKDNKFTEECSDQVITSLGANLKKIKECVGDPHADVENPVLKAEQDAQIGKGSRGDVTILPTLVINDRQYRGKLSRAAVLKAICAGFQETTEPSICLTQDMETNECLENNGGCWQDKSANITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGALRCTINNGGCWKGTQEGKVYSACIDDHTKGCKCPPGFEGDGINKCEDIDECEEKLKCQCPQCKCKNTWGSYECKCGSGLFYSQENDVCMGKYTASMSGGNFIGMIILVAAVAGIAGYAFYKIRIQRYMDSEIRQIMAQYMPLDNQPEVPSQLHHDI 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02459 628 Gene3D Laminin 412 458 - -
Aip04g02459 628 Gene3D Laminin 474 561 - -
Aip04g02459 628 Gene3D - 24 189 - -
Aip04g02459 628 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 607 - -
Aip04g02459 628 SMART egfca_6 519 561 IPR001881 GO:0005509
Aip04g02459 628 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 13 607 - -
Aip04g02459 628 CDD PA_VSR 52 180 - -
Aip04g02459 628 SUPERFAMILY PA domain 96 176 IPR046450 -
Aip04g02459 628 Pfam PA domain 64 166 IPR003137 -
Aip04g02459 628 CDD EGF_CA 519 550 - -
Aip04g02459 628 ProSitePatterns Calcium-binding EGF-like domain signature. 519 545 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02459 Aip-Chr4 110552719 110558546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02459 2 628 Miscellaneous Gene Families AT3G52850 71.224 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02459 - - gmx:100806422 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02459 04 110552719 110558546 Aip04g02459 04 110552719 110558546 ECH
Aip04g02459 04 110552719 110558546 Aip02g00614 02 9268258 9271522 PCT