Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02317 ATGGTTGCAGCTACAGAAGTTATGTCTGATGATAGAACCATTCAAGGAGTGCCTCTTCACACAACAACACCACCACCAGACACCAATTTATTGTCCCCTTCCTTAAATAGGTTGGAAGGGAAAATTGCGATTGTAACTGGTGGTGCCAAAGGAATAGGTGAAGCAGCAGTGAGACTGTTTGTGAAACATGGCGCAAAGGTTGTAATTGCTGACGTGGACGACACACATGGATCCAATCTTGCAAACTCACTTTCTCCATCAGCGACCTTCGTCCACTGTGACGTCAGCATAGAACCCGACATGGACAATTTGGTAACTTCCACAGTCTCCAAATACGGCAAACTGGACATAATGTTCAACAACGCCGGTGTGCTTGGTGACCAATCAAATTCCAAGAAGAGCATTGTCAATTTTGACCCTGATGAGTTTGACATGATAATGAGGGTCAACGTTAAAGGTGTTGCATTGGGAATTAAACATGCTTCAAGGGTCATGATTCCTAATGGAATTGGTTCAATAATCAACACTGCTAGTGTTGCGGGTGTTATGGGTGGTCTTGGTCCACATTCTTACACCGCTTCAAAGCATGCGATTCTTGGACTCACTAAGAACACTGCTTGTGAGTTAGGGAGGCATGGCATAAGGGTAAATTCAATTTCACCATTTGGGGTTGCCACGTCATTGCTTGTTAACGCGTGGCATACTAGTGAGGAGGCGGAGGGTAATAATGTAAATTTGCCTTCGCATGAGGAAGTTGAGAAGATTGAGGAATTTGTTAGAGGGCTTGCAAATTTGAGAGGGGTAACTCTGAGGTCGTCGGATATTGCTGAGGCTGCACTTTTTCTTGCTAGTGAAGAATCTAAGTATGTTAGTGGCCATAATCTTGTTGTGGATGGTGGAATCACTTCTACAAGAAATTGCATTGGCCTTTAG 933 0.4405 MVAATEVMSDDRTIQGVPLHTTTPPPDTNLLSPSLNRLEGKIAIVTGGAKGIGEAAVRLFVKHGAKVVIADVDDTHGSNLANSLSPSATFVHCDVSIEPDMDNLVTSTVSKYGKLDIMFNNAGVLGDQSNSKKSIVNFDPDEFDMIMRVNVKGVALGIKHASRVMIPNGIGSIINTASVAGVMGGLGPHSYTASKHAILGLTKNTACELGRHGIRVNSISPFGVATSLLVNAWHTSEEAEGNNVNLPSHEEVEKIEEFVRGLANLRGVTLRSSDIAEAALFLASEESKYVSGHNLVVDGGITSTRNCIGL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02317 310 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A 31 310 - -
Aip04g02317 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Aip04g02317 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Aip04g02317 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 IPR002347 -
Aip04g02317 310 Gene3D - 30 309 - -
Aip04g02317 310 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 31 310 - -
Aip04g02317 310 CDD secoisolariciresinol-DH_like_SDR_c 37 302 IPR045309 GO:0016616
Aip04g02317 310 Pfam Enoyl-(Acyl carrier protein) reductase 47 302 - -
Aip04g02317 310 MobiDBLite consensus disorder prediction 1 27 - -
Aip04g02317 310 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 302 IPR036291 -
Aip04g02317 310 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Aip04g02317 310 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Aip04g02317 310 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Aip04g02317 310 PRINTS Glucose/ribitol dehydrogenase family signature 191 210 IPR002347 -
Aip04g02317 310 PRINTS Glucose/ribitol dehydrogenase family signature 212 229 IPR002347 -
Aip04g02317 310 PRINTS Glucose/ribitol dehydrogenase family signature 265 285 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02317 Aip-Chr4 105972975 105974641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02317 38 302 Miscellaneous Gene Families AT2G29290 30.370 1.39e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02317 - - gmx:100775210 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02317 04 105972975 105974641 Aip04g02317 04 105972975 105974641 ECH
Aip02g02428 02 97657684 97659241 Aip04g02317 04 105972975 105974641 PCT