Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02304 ATGCAGAAATTCTCCACAGTAGTAATGGACACCTCGACACTCCTTTCTTCTCCTTCTTCTTCTTCTTCCAGTTCTCTTTCTCCTTATCCCTTCCACAAGCGGAGCATCTTCACCACCGCAACTTCTTCCTCTTCCTTCAAGGAAGACACCTACTTCCTCTCCCAACTCAAACCCTCTGAGAACAAATCACTTCAAGAACTCAAGAACAAGCTCAACTCCATTGCTTCTTCTGGAGAATCCAACAACAACAATGACTATTATTCGATGTGGGGCATTCCCTTGCTCACCGGAACTGAAAACGCCGACGTCATTCTCCTAAAGTTCCTCAGAGCAAGAGACTTCAGAGTCTCTGATTCCCTCGCCATGCTCCTCAAATCCCTCTCATGGAGGAAGGAATTCGGTGCCGACGCCATTGTTGGTGAGGAGCTAGGCTTCAAGGATCTTGAAGGAGTAGTAGCTTATATGCAAGGCTATGACAGAGAAGGCCACCCTGTGTGTTACAATGATTATGGCTTGTTCAAAGATAAGGGAATGTATGAGAAGGTTTTTGGCGGTGGTGGTGATGGTGGTGATGATGAAGAGAAGCTGAACAAGTTCTTGAGATGGAGGGTTCAGGTTCTTGAGAGGGGTATTAAGCTTCTGAATTTTAAGCCTGGTGGGGTTAATTCTCTCATTCAGGTTACTGATCTTAAGGACATGCCAAAGAGAGAGTTAAGGGTTGCTTCTAATCACATTTTGTCTTTGTTTCAAGATAATTATCCTGAAATGGTGGCTCGCAAGATTTTCATCAATGTGCCATGGTACTTCTCAGTGCTGTATTCAATGTTCTGTCCATTTCTGACCCCAAGAACAAAGAGCAAGTTTGTGATCTCTAAAGAAGGAAATGCTGCTGAGACACTTTACAAATTTATCAGGCCTGAGGATATTCCTGTAAGGTATGGAGGACTGAGTAAGACTAGTGATTTGCAAAATGGTCCCCCAAAACCTGCTTCTGAGTTCACAGTTAAAGGAGGAGAGAAAGTTAACATACAAATTGAAGGCATTGAGAGTGGTGCAAGTATCACATGGGACATAGTGGTGGGAGGTTGGGACTTGGAATACAGTGCTGAGTTTGTCCCAAATGAAGAAGGCAGCTACACCATAGCAGTTGAGAGGGCAAGGAAAGTTGAAGCCTCAGAAGAAGCCATCCACAACACATTCACTTCAAAGGAATCAGGCAAATTGGTGCTCTCTGTTGATAACAGTGCCTCTAGGAAGAAAAAAGTTGCTGCTTACCGCTATTTTGTGCAGTTAAATAATTAA 1302 0.4378 MQKFSTVVMDTSTLLSSPSSSSSSSLSPYPFHKRSIFTTATSSSSFKEDTYFLSQLKPSENKSLQELKNKLNSIASSGESNNNNDYYSMWGIPLLTGTENADVILLKFLRARDFRVSDSLAMLLKSLSWRKEFGADAIVGEELGFKDLEGVVAYMQGYDREGHPVCYNDYGLFKDKGMYEKVFGGGGDGGDDEEKLNKFLRWRVQVLERGIKLLNFKPGGVNSLIQVTDLKDMPKRELRVASNHILSLFQDNYPEMVARKIFINVPWYFSVLYSMFCPFLTPRTKSKFVISKEGNAAETLYKFIRPEDIPVRYGGLSKTSDLQNGPPKPASEFTVKGGEKVNIQIEGIESGASITWDIVVGGWDLEYSAEFVPNEEGSYTIAVERARKVEASEEAIHNTFTSKESGKLVLSVDNSASRKKKVAAYRYFVQLNN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02304 433 Pfam CRAL/TRIO, N-terminal domain 64 124 IPR011074 -
Aip04g02304 433 Gene3D GOLD domain 333 430 - -
Aip04g02304 433 Gene3D - 52 132 - -
Aip04g02304 433 Pfam CRAL/TRIO domain 149 315 IPR001251 -
Aip04g02304 433 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 332 430 IPR036598 -
Aip04g02304 433 PANTHER PATELLIN-1 21 430 IPR044834 GO:0008289
Aip04g02304 433 SUPERFAMILY CRAL/TRIO domain 148 319 IPR036865 -
Aip04g02304 433 SMART sec14_4 147 318 IPR001251 -
Aip04g02304 433 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 141 321 IPR001251 -
Aip04g02304 433 Gene3D - 148 332 IPR036865 -
Aip04g02304 433 SUPERFAMILY CRAL/TRIO N-terminal domain 38 141 IPR036273 -
Aip04g02304 433 CDD SEC14 145 316 IPR001251 -
Aip04g02304 433 SMART CRAL_TRIO_N_2 101 126 IPR011074 -
Aip04g02304 433 ProSiteProfiles GOLD domain profile. 297 431 IPR009038 -
Aip04g02304 433 PANTHER PATELLIN-6 21 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02304 Aip-Chr4 105653749 105657576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02304 107 287 Acyl Lipid Metabolism Gene Families AT5G47730 26.842 1.77e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02304 - - cpap:110822882 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02304 04 105653749 105657576 Aip04g02304 04 105653749 105657576 ECH
Aip04g02304 04 105653749 105657576 Aip02g02398 02 97139207 97144052 PCT