Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02252 ATGTCTCGAAGATATGATAGCCGTACAACAATCTTCTCCCCTGAGGGACGTTTGTACCAAGTGGAGTATGCAATGGAGGCCATCGGGAATGCTGGTACTGCAATAGGGGTCCTATCAAAAGACGGGGTTGTTTTGGTTGGTGAAAAGAAGGTCACATCCAAGTTGCTGCAAACTTCAACTTCCACCGAGAAAATGTACAAGATTGATGATCATGTTGCATGCGCTGTGGCCGGAATTATGTCCGATGCCAACATTCTCATCAATACTGCTAGAGTCCAAGCACAACGCTACACATATGCTTACCAAGAGCCAATGCCCGTCGAGCAGTTGGTTCAGTCTCTCTGTGACACTAAGCAAGGTTACACACAATTCGGTGGTCTTCGTCCATTTGGGGTCTCGTTCCTTTTTGCCGGGTGGGACAAAAACTTTGGCTTTCAGCTTTACATGAGTGACCCTAGTGGGAACTACGGTGGTTGGAAAGCTGCAGCTATCGGTGCAAACAACCAGGCGGCACAGTCAATACTAAAACAGGACTACAAGGAGGATATCACAAGGGAAGAAGCAGTTCAACTTGCATTGAAGGTGCTAAGCAAAACTATGGACAGCACAAGTCTAACTTCAGAAAAGCTTGAACTCGCAGAGGTTTTCCTCGCGCCCTCTGGAAAGGTCAAGTACCAAGTTTGCTCCCCCGAGACACTGACAAAGCTGTTGGTGAAGTTTGGCGTCACCCAACCTGCAACTGACACTGCTTAG 753 0.4781 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGVLSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKAAAIGANNQAAQSILKQDYKEDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVFLAPSGKVKYQVCSPETLTKLLVKFGVTQPATDTA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02252 250 CDD proteasome_alpha_type_4 3 215 - -
Aip04g02252 250 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 249 - -
Aip04g02252 250 ProSitePatterns Proteasome alpha-type subunits signature. 5 27 IPR000426 GO:0006511|GO:0019773
Aip04g02252 250 ProSiteProfiles Proteasome alpha-type subunit profile. 20 237 IPR023332 -
Aip04g02252 250 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 231 IPR029055 -
Aip04g02252 250 Pfam Proteasome subunit 30 214 IPR001353 GO:0005839|GO:0051603
Aip04g02252 250 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 249 IPR029055 -
Aip04g02252 250 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-4-A 1 249 IPR034647 GO:0019773
Aip04g02252 250 Pfam Proteasome subunit A N-terminal signature 5 27 IPR000426 GO:0006511|GO:0019773
Aip04g02252 250 SMART Proteasome_A_N_2 5 27 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02252 Aip-Chr4 103364568 103367417 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02252 K02728 - gmx:100786457 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02252 04 103364568 103367417 Aip02g02366 02 96606550 96607302 PCT