Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01396 ATGGACTGCTGCAAGGATTGCCACCGTTTGTCCGTCGCAGCTTCTTCCTCGAGCTCGGTGTCAGTCCCTGGTGTTCATCTGCTCCGTCGCACTCCTGCCGTCGTCCGTCGCTCTCCTGCCATCGTCCGTCGCTCCCCTGCTGCCGTCTGTCGCACTCAGGCACCGTCTTTGTCTGGTCGTGGTGCTCGAAGTTCCCAACCCACCAATCGCAGCTTCTTCATCGAGCTCGGCGTCTTCGAGTGTGCTCTTCGTTTGCTCAGCTGCAGGACTGCCGCCGTCCGTCGTCATTCTCGTCGTCTGGGCTCCGTCTCCGTCGCACTTTTGCCCCTCTGCTCAGACTGCTTAGAAGTCAGAACGAAGGAAGCAACTATCATTTGTGTCCAACTATGGCATTGCCTATTTGGAGAAAGACCATTCTCCTCCTCTTCTTCTTCATGCTCCTCAAAGAACCATTCACTCCAAACGTTACTGAAGCGTGGATTCACACCAACCCTGAAATCCATCAACATATTCCTCCTCTCCCTCCTCCGCCACCGCAAGTTCAACCTCATCATCCACCTCTTCACCACTGCCACACTCATCCCCACTAACCCTACCACCCACTCCATCCTCACATGGGCACTCCTCCATTCTAGAAGCTTCCAAGATGCCGAGAATCTCATCTTAACTCACTTCACCCATTCCCATCCTCGCATCTGGGACACACTCATCCGTACCCACCATGACCCTAATAGGGCACTCTTTCTTCTACGCTATTGCCTCCAAAACGGTGCCGTTTTGCCCGCTCCTCTCACTTTCTCTTCTCTTATTCACAGGCTCTCTTCTCAGGGGGACCTAGGCATGGCAATGGAGGCACTGGAGATCATGACAGATCATAGGGTAAGGTACCCTTTTGATGATTTTGTTTGTAGCTCCGTGATTTCTGGGTTTTGTAGGATTGGGAAGCCTGAACTTGCGTTAGGGTTTTATGACAATGCTGTGGGTTCTGGGGCACTGTTGAGGCCCGGCTTGGTTACTTTAACTGCAATTGTTGGTGCACTTGTTAGTGTTTGGGTTTGTGGGTATGTTAAAGGGAACGACTTGGTGGAGGTTTTTCGAAAGATGAGGGAAATGGTGGTGGTGAAGGGTATCGATCATGATCATGTGAGTTATACTATACTCATTGATGGGTTTTCTAAGTTAGGCGATGTGGAGAAGTCATTTGGGATCTTGGCTAAGATGATAAAGGAAGGGAAGAGACCCAATAAGGTCACTTACACTGCAATAATATCTGCTTATTGTAAGAAGGGTAAAGTTGAGGAAGCACGTGGTGTTTTTGAGAGGATAGGTGAGTTGGGAATTGAGTTGGATGAGTTTGTGTATGCAGTTTTGATTGATGGATATTGTCGGATTGGAGATTTTGGTAGTGTCTTTAAGCTATTTGTTGAAATGGAGAAAAGAGGGGTTAGTCCTAGTGTTGTTACGTATAATACCATAATAAATGGTTTGTGCAAGTTCGGGAGGACGTCTGAGGCGGATGAGTTATCGAAAGATGTGGCTGCAGATGTGATTACGTACAGCACGTTGTTGCATGGTTATACTGAAGAAGAGAACACTCTGGGGATTTTGCAGACAAAGAGGCGACTAGAAGAAGCTGGAATCGCCATGGATATCATAATGTGCAATGTGCTGATCAAAGCATTGTTTATGATGGGGGCTTTTGAAGATGTTTATGCTCTTTACAAAGGAATGCCAGAAATGGGCCTGGTTCCGAATTCTGTTACTTATTGCACAATGATTGATCAGTATTGCAAGGTAGGTAGAATTGACGAGGCACTTGTGGTATTTGATGACTTCAGAAAAACATCATTCTCTTCACCTGTATGCTACACTAGTATTATTCATGGACTCTGCAAGAAGGGTATGGTAGAAATGGCCATTGAGGCATTAGCCGAACTCAATGATAAAGGACTGGAGTTAAGTAGATATACATTTAGGATGTTAATGAGGACACTTCTCACTGAAAAGGGTGCAAAAGAGGTTTTAGATTTAGTTTACACAATGGAAGGATTGGGCCAAGACTTATATGAGTCAGTATGTAATGATGCAATCTTTTTATTATGCAGAAGAGGATTTCTTGAGGATGCATATCGCTTGTGCTTGATGATGAGAAAGACAGGTTTATACGTTACAAGAAATTCTTATTATTCTGTTTTAAGAAGCTATCTTAGTAACAGGAATAGGGAGCACATGCTACCCCTATTGAATATCTTTCTAAAAGAATATGGCCTAGTTGATCCAATGATGCGAAGGATACTAGCATGCTACCTATGCTTAAAAGATATCCATAATCCCCTTCAATTTATGGGAAAAACAATCTCTCTTCCTGTCGCCATCTTCAGGATTCTGATAAAGGAAGGTAGAGCTTTAGATGCATATAAGCTTGTGGTAAAGACTCAAGATAGTTTACAAGTCATGTATGCTGATTATGCCATTCTGATTGATGCCTTATGCAAGGGAGGATATCTCAATAAAGCATTGGATCTTTGTGCCTTCGTTGAAAAGAAAGGGATCACTTTGGACATAGTTGTATATAATTCTATAATAAATGGATTGTGCCATGAGGGACGTCTTATTGAAGCATTTCGGCTATTTGATTCATTGGAGAAACTTAATTTGATACCATCTGAAATAACTTATGCCACATTAATTTATGCACTAAGTAGGGAGGGATATCTGGTAGATGCTGAGCATGTTTTCAGTAAAATGGTCCTGAAGGGCTTTCAACCAAAAACACAAGTTTATAATTCACTACTTGAGGGTATTTCAAAGTTTGGTCAATTAGAGAATGCGCTCGAGCTTCTAAACGATTTGGAGACAAAATATATTGAGCCTGACAGCTTGACGGTTAGTGCTGTCATAAATTGCCATTGCCAAAAGGGCAACATGGAAGGAGCACTTCAATTCTATTATAAGTTCAAGAGGAAGGATGTATCACCTGATTTTTTTGGGTTCTTGTACTTGATAAGAGGCTTATGTTCAAAGGGACGGATGGAAGAAGCTAGGAGTGTCTTGAGAGAAATGCTCAAATCGAAGAATATTGAAGAGATAATTAACATAGTTAACAATGAGGTTGATAATGAGTCAATAGGTGGCTTTCTTGCCATTTTGTGTGAGCAAGGAAGTATTCAAGAAGCCCTTGCAGTTCTCAATGAAATTGCAAGCACGCTTTATCCTGTTCTAAGGTTATCTACATATAATCAAGGAGCTCACGCACAGAGGAACATTTCTGAGCTGAACGCTGGTTTACAATCTTCAAGGCGTCTATCCTCCTCTTGTAGAACTGGTTTGGATTTTGGATCTTGTGATGCTAGCGATGAAAGTGATCTTACAATAAATAATGATAGTCATGTGACAAGGTCCCGGCCACTCAATTTCGACTTCTATTATTCCATGATTGCCACACATTGTGCCAAAGGGGAGCTACAGAAAGCTAATCAAGTAGCTAAGGGAATGCTTTCCCACCTAAGTCGAGGAGCTGAACATAAGAAAGAAGAGAGAAAATGA 3546 0.4306 MDCCKDCHRLSVAASSSSSVSVPGVHLLRRTPAVVRRSPAIVRRSPAAVCRTQAPSLSGRGARSSQPTNRSFFIELGVFECALRLLSCRTAAVRRHSRRLGSVSVALLPLCSDCLEVRTKEATIICVQLWHCLFGERPFSSSSSSCSSKNHSLQTLLKRGFTPTLKSINIFLLSLLRHRKFNLIIHLFTTATLIPTNPTTHSILTWALLHSRSFQDAENLILTHFTHSHPRIWDTLIRTHHDPNRALFLLRYCLQNGAVLPAPLTFSSLIHRLSSQGDLGMAMEALEIMTDHRVRYPFDDFVCSSVISGFCRIGKPELALGFYDNAVGSGALLRPGLVTLTAIVGALVSVWVCGYVKGNDLVEVFRKMREMVVVKGIDHDHVSYTILIDGFSKLGDVEKSFGILAKMIKEGKRPNKVTYTAIISAYCKKGKVEEARGVFERIGELGIELDEFVYAVLIDGYCRIGDFGSVFKLFVEMEKRGVSPSVVTYNTIINGLCKFGRTSEADELSKDVAADVITYSTLLHGYTEEENTLGILQTKRRLEEAGIAMDIIMCNVLIKALFMMGAFEDVYALYKGMPEMGLVPNSVTYCTMIDQYCKVGRIDEALVVFDDFRKTSFSSPVCYTSIIHGLCKKGMVEMAIEALAELNDKGLELSRYTFRMLMRTLLTEKGAKEVLDLVYTMEGLGQDLYESVCNDAIFLLCRRGFLEDAYRLCLMMRKTGLYVTRNSYYSVLRSYLSNRNREHMLPLLNIFLKEYGLVDPMMRRILACYLCLKDIHNPLQFMGKTISLPVAIFRILIKEGRALDAYKLVVKTQDSLQVMYADYAILIDALCKGGYLNKALDLCAFVEKKGITLDIVVYNSIINGLCHEGRLIEAFRLFDSLEKLNLIPSEITYATLIYALSREGYLVDAEHVFSKMVLKGFQPKTQVYNSLLEGISKFGQLENALELLNDLETKYIEPDSLTVSAVINCHCQKGNMEGALQFYYKFKRKDVSPDFFGFLYLIRGLCSKGRMEEARSVLREMLKSKNIEEIINIVNNEVDNESIGGFLAILCEQGSIQEALAVLNEIASTLYPVLRLSTYNQGAHAQRNISELNAGLQSSRRLSSSCRTGLDFGSCDASDESDLTINNDSHVTRSRPLNFDFYYSMIATHCAKGELQKANQVAKGMLSHLSRGAEHKKEERK 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01396 1181 PANTHER ATPASE EXPRESSION PROTEIN 3 847 1170 - -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 959 993 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Aip04g01396 1181 PANTHER FERTILITY RESTORER-LIKE 796 851 - -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 854 888 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat 580 610 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat 990 1021 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 889 923 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Aip04g01396 1181 Gene3D Tetratricopeptide repeat domain 904 1112 IPR011990 GO:0005515
Aip04g01396 1181 Gene3D Tetratricopeptide repeat domain 350 511 IPR011990 GO:0005515
Aip04g01396 1181 Pfam PPR repeat 302 325 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat 265 292 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat 823 851 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 515 IPR002885 -
Aip04g01396 1181 Gene3D Tetratricopeptide repeat domain 618 685 IPR011990 GO:0005515
Aip04g01396 1181 Gene3D Tetratricopeptide repeat domain 512 617 IPR011990 GO:0005515
Aip04g01396 1181 Gene3D Tetratricopeptide repeat domain 785 903 IPR011990 GO:0005515
Aip04g01396 1181 Gene3D Tetratricopeptide repeat domain 232 349 IPR011990 GO:0005515
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 962 994 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 453 486 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 856 889 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 891 923 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 487 508 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 1001 1025 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 417 451 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 621 653 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 553 585 IPR002885 -
Aip04g01396 1181 TIGRFAM PPR: pentatricopeptide repeat domain 587 617 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 994 1024 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Aip04g01396 1181 PANTHER ATPASE EXPRESSION PROTEIN 3 191 667 - -
Aip04g01396 1181 PANTHER ATPASE EXPRESSION PROTEIN 3 796 851 - -
Aip04g01396 1181 Pfam PPR repeat family 854 901 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat family 380 427 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat family 923 972 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat family 450 498 IPR002885 -
Aip04g01396 1181 Pfam PPR repeat family 621 665 IPR002885 -
Aip04g01396 1181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 924 958 IPR002885 -
Aip04g01396 1181 PANTHER FERTILITY RESTORER-LIKE 191 667 - -
Aip04g01396 1181 PANTHER FERTILITY RESTORER-LIKE 847 1170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01396 Aip-Chr4 27297273 27303856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01396 364 927 Glycosyltransferase AT1G05670 23.570 1.03e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01396 - K17964 gmx:100783405 1373.22