Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01260 ATGAAATTTTTAATCTCATTCTTACCCTTTTTCTTCTTGGTGGTGGTACAACAAGAAGCCACTTGCTTCAATCAACACAAAGAACTTTCTCATAATATTAGAAACAAACTCAAGGGTAGATTGGCCATTTCCCTCTCTCATCCACCATCACAAACGGCAAAGGGAGGAAGCAGAGTGGTGTACCCGGCGGAGTACGGCGCAGACACGAGCGGAGCACGTGACAGCAGCGACGCAATTATAAAGGCATTGGAGGATGCATTCAGTTTGGAGAGTGAGGCGGAGCTGCTTCCGGGGGTTAAAGACCTTGGGGGTGTATTGGTTGACCTGCAAGGTGGGAACTACACAATTAGCAAGCCCATCAAATTCCCTTCTTCTGCTGCTGGCAATCTTGTGGTACAAGGAGGAACGTTGAGAGCTTCTGATGCATTTCCCACTGATGGCCATCTAGTTGAGTTATGGGCATCTAGTTCCCAAAAGCTCTCGAAAACAGCATCATTTGATGACTTGTACAACAAGAAACTTCAGCAACCTAAAGGGATTTACTACGAAGACATAACATTCCGTGACATTCTATTCGATTCGGGCTACCATGGAGGAGGAATCTTTGTAGTTGATTCGGCTAGGATCCGAATCAACAACTGTTTCTTCCTCCATTTCACTACAGAGGGAATCCTAGTCCAAGGTGGCCACGAAACTTACATATCTAGCTGCTTTCTTGGGCAACACTCAACCGTAGGAGGGGACTCCGGCGAGCGACAATTCTCGGGAACTGCGATTGAACTTGCTAGCAATGATAACGCAATTACCGATATTGCGATCTTCTCGTCTGCCATAGGGATTGTCCTAAGGGGCCAAGCCAACATCGTTACCGGGGTCCATTGTTACAATAAGGCCACCGGTTTTGGTGGCATAGGAATCTTGGTAATGCTAGCCGGAAATTCACAAACAAGAATTGATAATTGTTACATGGATTACACAACAATTGTGATGGAAGACCCTGTTCAAGTTCATGTCACTAATGGATTTTTCTTGGGGGATGCTAACATTGTTTTGAAATCAATTAAGGGACAAATATCAGGATTGAAGATAGTCAATAATATGTTCACTGGGAACCCTAACGCTAAAGTTCCAATTGTGGCATTAGATGGAGTGTTTGGTAACGTTGACCAGGTGGTCATTGATTTGAACAGTGTTGATGGAATGGGGTTGAGATCAACGGTTGGGAAGCAATCTGTGGCTGGGAATGGAACAAAATGGGTGGCTGATTTTTCAGGAATTTTGGAATTTGTTAATGTGACCAAACAAATAGTCTATTCTAGCCAACAATCTCTGGGACTTGCACTCCAAAATGAGAAATCATTGCTAAAGTCTCAAGATAGAGTTGAAGTACTTTTAAAGTACCTTAACTCGCTGGACGAGGATCAAGTATTATTTGAGCCAGAGAAAAAAATTTTGGGAACTGAGAATGAGAATTCTGATGTCTAG 1485 0.435 MKFLISFLPFFFLVVVQQEATCFNQHKELSHNIRNKLKGRLAISLSHPPSQTAKGGSRVVYPAEYGADTSGARDSSDAIIKALEDAFSLESEAELLPGVKDLGGVLVDLQGGNYTISKPIKFPSSAAGNLVVQGGTLRASDAFPTDGHLVELWASSSQKLSKTASFDDLYNKKLQQPKGIYYEDITFRDILFDSGYHGGGIFVVDSARIRINNCFFLHFTTEGILVQGGHETYISSCFLGQHSTVGGDSGERQFSGTAIELASNDNAITDIAIFSSAIGIVLRGQANIVTGVHCYNKATGFGGIGILVMLAGNSQTRIDNCYMDYTTIVMEDPVQVHVTNGFFLGDANIVLKSIKGQISGLKIVNNMFTGNPNAKVPIVALDGVFGNVDQVVIDLNSVDGMGLRSTVGKQSVAGNGTKWVADFSGILEFVNVTKQIVYSSQQSLGLALQNEKSLLKSQDRVEVLLKYLNSLDEDQVLFEPEKKILGTENENSDV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01260 494 PANTHER POLYGALACTURONASE QRT3 5 440 IPR039279 GO:0004650
Aip04g01260 494 Gene3D - 63 458 IPR012334 -
Aip04g01260 494 SUPERFAMILY Pectin lyase-like 63 393 IPR011050 -
Aip04g01260 494 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 5 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01260 Aip-Chr4 20907382 20913798 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01260 - - gmx:100802482 632.098