Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01259 ATGTTCTCTTTTGTTTTATATATCTTTTCTGATTTGGTTTACTGTTTTATAGTTGCTGGCAAGGATATTGAAGGAGACAAAGAATTTTATAGCAATGAAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTAAGGCAAGAGAAGAAAGGTTTGCTAAACAAAGAGGAAGAAAAAGAACAAGCTGAAGATGATGATTACCTTTTGGCGGAAGCGAGGCAACCACTATGGCGCAAGGTTCCAATAGCTTCAAGCCTAATCAACCCATATCGCATAGTGATTGTGATGAGGCTGGTGATCCTAGCATTCTTTTTCAGATTTCGGATCTTAACTCCGGCCTATGATGCATATCCCTTGTGGCTTATCTCTGTGATATGTGAGATATGGTTTGCAATGTCATGGATCCTTGATCAGTTCCCAAAGTGGTTCCCCATCACGCGCGAGACTTACTTGGACCGGTTGTCCATAAGGTTCGAGCGTGAAGGGGAGCCAAACCAACTGTGCCCTGTTGATGTGTTTGTGAGTACTGTGGATCCTCTGAAGGAGCCACCAATCATAACAGCAAACACTGTTCTTTCAATCCTCTCTGTTGACTATCCTGTTGAGAAGGTGTGCTGCTATGTCTCGGACGATGGTGCTTCCATGCTCCTCTTTGATTCGTTGGCCGAAACTGCCGAGTTTGCAAGAAGATGGGTTCCATTCTGCAAAAAGTATAAGATCGAGCCAAGGGCTCCTGAGTTCTATTTCTCTGAGAAGATTGATTACTTGAAGGACAAGGTTCAGCCTACATTCGTTAAGGAGCGAAGAGCCATGAAGAGAGAATATGAAGAATTCAAAGTGAAAATCAATGCCTTGGTGGCAAAGGCTCAGAAGAAACCAGAAGATGGATGGGTGATGCAAGATGGAACTCCATGGCCGGGAAACAACACTCGCGATCATCCGGGAATGATTCAGGTATATTTGGGTACTGCTGGTGCACTAGACGTGGAAGGCAAGGAACTGCCGCGACTCGTGTATATTTCGCGTGAGAAACGGCCTGGCTATCCACACCACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTTCTTACAAATGCACCTTTCATGCTGAATCTGGATTGTGATCACTACATCAATAACAGCAAGGCTTTAAGAGAGGCTATGTGCTTCTTGATGGACCCCCAGCTTGGGAAGAAGCTCTGTTATGTCCAATTTCCACAAAGATTCGACGGTATTGATCGCCATGATAGATATGCTAATCGAAACACTGTGTTCTTTGATATCAATATGAAAGGACTAGATGGGATTCAAGGTCCGGTTTATGTTGGTACTGGAACTGTGTTTAACAGGCAAGCATTGTACGGCTATGATCCACCGGTATCCGAGAAGAGGCCCAAGATGACTTGTGACTGTTGGCCATCATGGTGTTGCTTTTGCTGCGGCGGTTCCAGGAAATCCAAGTCAAAAAAGAAATCAGGAGCAGGAAGTGGTCTCTTAGGTGCATTATACACCAAGAAGAAGAAGAAAATGATGGGAAAAAATTATGTTAGAAAGGGTTCTGGCTCCATGTTTGATCTTGAAGAGATTGAAGAAGGTCTTGAAGGCTATGAGGAGCTAGAGAAGTCATCTCTCATGTCACAGAAAAACTTTGAGAAGCGATTCGGGCAATCGCCGGTTTTCATTGCTTCCACTTTGATGGAGAATGGAGGACTACCTGAAGGCACCAATTCTCAAGCATTGGTTAAGGAGGCCATTCATGTTATAAGCTGTGGCTATGAAGAGAAGACTGACTGGGGCAAAGAGATTGGATGGATTTATGGGTCAGTGACAGAAGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGGGCAGCTTTCAAGGGATCTGCACCAATAAATCTATCAGATAGGTTGCACCAAGTTCTGAGGTGGGCTCTTGGTTCGGTTGAGATTTGCCTAAGTCGCCATTGTCCATTATGGTATGGCTATGGAGGAAAGTTGAAGTACTTAGAGAGGTTGGCTTACACTAACACCATTGTTTATCCATTCACTTCCATTCCTTTGCTTGCATATTGCACAATACCAGCTGTTTGTCTCTTGACCGGGAAATTCATCATCCCCACTCTGACCAACCTTGCTAGTGTATGGTTCATGGCCCTATTTATCTCCATCATCTTAACCGGTGTCCTCGAGCTCCGGTGGAGTGGCGTTACCATAGAAGACTGGTGGCGAAACGAGCAATTCTGGGTGATCGGAGGCGTATCGGCCCACCTTTTCGCCGTATTCCAAGGACTTCTGAAAGTCCTTGCCGGAGTAGACACCAACTTCACTGTCACAGCAAAAGCAGCAGACGATACAGAATTCGGAGAGCTGTATATGTTCAAATGGACAACACTTCTCATCCCACCAACCACTCTCATAATCTTGAACATTGTTGGAGTTGTAGCTGGTGTGTCTGATGCAATCAACAATGGATATGGATCATGGGGTCCCTTGTTTGGGAAGCTATTCTTTGCATTTTGGGTCATTGTTCACTTATATCCTTTCCTCAAAGGTCTCATGGGGAAACAAAACAGAACTCCTACTATTGTGGTTCTTTGGTCAATTCTTTTGGCTTCTATTTTCTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCAAAGCAAACAGGTCCAATACTCAAACAATGTGGTGTAGAATGCTAA 2745 0.4412 MFSFVLYIFSDLVYCFIVAGKDIEGDKEFYSNEEWQERVEKWKVRQEKKGLLNKEEEKEQAEDDDYLLAEARQPLWRKVPIASSLINPYRIVIVMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFAMSWILDQFPKWFPITRETYLDRLSIRFEREGEPNQLCPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVEKVCCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYKIEPRAPEFYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVKINALVAKAQKKPEDGWVMQDGTPWPGNNTRDHPGMIQVYLGTAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKKSGAGSGLLGALYTKKKKKMMGKNYVRKGSGSMFDLEEIEEGLEGYEELEKSSLMSQKNFEKRFGQSPVFIASTLMENGGLPEGTNSQALVKEAIHVISCGYEEKTDWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVTIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDTEFGELYMFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01259 914 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 279 460 IPR029044 -
Aip04g01259 914 SUPERFAMILY Nucleotide-diphospho-sugar transferases 182 718 IPR029044 -
Aip04g01259 914 Pfam Cellulose synthase 169 907 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aip04g01259 914 Coils Coil 267 287 - -
Aip04g01259 914 Coils Coil 44 64 - -
Aip04g01259 914 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 30 914 - -
Aip04g01259 914 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 30 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01259 Aip-Chr4 20858027 20862071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01259 155 914 Glycosyltransferase AT5G44030 84.286 0.0 1344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01259 K10999 - gmx:100781996 1649.8