Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01255 ATGGCAAGAACATTTCTAGTTTGGTTCTTGTGTCTTGGGGTGCCTTGTTTCTTTGTAATTATTGATGGTGGAGTTTATGGAGATCAGAACTTGCATCCAAGAACCATTTCTGGTGCCAATCACTACCATAAAGATATAAGAAGATTACAAGCCTTTAAGGCCTCTCTTACTAGACATGGTTCTGTTGCTTCAACATCTTCTTCATTTTCATCCTCTTTTGCTTCTTCCCCTTTGCTATCTGAGGGTGTGAACAATCCACGCGTATACCACGTGACATCGTATGGGGCAGATCCAAGTGGGAATTCAGACAGCACAGAAGCAATTCTTGCAGCCATAGCAGATGCAGCCAAGGTTCCAAGTCAAGGACAGTTGATGCAGGGCATCACTGATCTTGGAGGTGCCCATGTTGATCTTGAGGGTGGTAGCTACCTCATCAGCCGTCCACTGCGCTTGCCGGCCGCCCGTCTAGGGAACCTCATGATACATGGTGGAACTATAAGAGCCTCAAATAACTTTCCAGAAGATGGAGGTGGGGGCATTTCAGTAATTAACTCACTCAGAACTAACATAGACAACTGTTACATTACACACTTCACCACAAATGGAATTTTAGTCCAAAGTGGTCATGAGACATACATTAGAAACACTTTTCTTGGCCAGTACGTAACCGCTGGAGGTGATAAAAATGAAAAGAATTTCTCCGGGACCGGAATAAGTCTCCTCGGCAACGATAACGCCGTCACGGATGTTGTCATCTTCTCTGCAGCTATAGGAATAATGGTAACGGGTCAGGCCAACACGTTCTCCGGCGTGCATTGTTACAATAAGGCCACCGGATTCGGAGGGACCGGGATATATCTGAAGCTGCCGGGGCTAACACAGACAAGGATTGTGAATTCTTACATGGATTACACGAGTATCGTCGCCGAGGATCCGGTCCAGCTCCATGTCTCTAGCAGTTTCTTCCTTGGTGATGCCAACATTGTCCTTAAATCAGTGAAAGGTGTTGTGAATGGAGTCAGCATTGTTGATAACATGTTTTCAGGGTCCAGTTCTGGGGTGGAGATTGTTCAATTGGACCAATCAAACAACAGTTTCAACCAAATTGATCAAGCTATTGTTGATAGGAACATTGTGAGGGGAATGAATTTGAAGGCCACAGTGGCAAAAATGTCAATTCGAGGGAATGGAACATTATGGAATGTTGATTTTAGTAATGTTCTGCTTTTTCCAAACCTTATCAGAAATGTTCAGTACTCATTAAGCTCTAGTGGTGGAACATTCCCTAATCATGCTTTGAGGAATGTATCTGAGAACAAGGTTGTGATTGAAACAAGTGAAGCAGTGGATGCAAATGTTTTTGTTACTGTGGATCAGAGTATGGTAAATTGA 1392 0.4375 MARTFLVWFLCLGVPCFFVIIDGGVYGDQNLHPRTISGANHYHKDIRRLQAFKASLTRHGSVASTSSSFSSSFASSPLLSEGVNNPRVYHVTSYGADPSGNSDSTEAILAAIADAAKVPSQGQLMQGITDLGGAHVDLEGGSYLISRPLRLPAARLGNLMIHGGTIRASNNFPEDGGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNTFLGQYVTAGGDKNEKNFSGTGISLLGNDNAVTDVVIFSAAIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHVSSSFFLGDANIVLKSVKGVVNGVSIVDNMFSGSSSGVEIVQLDQSNNSFNQIDQAIVDRNIVRGMNLKATVAKMSIRGNGTLWNVDFSNVLLFPNLIRNVQYSLSSSGGTFPNHALRNVSENKVVIETSEAVDANVFVTVDQSMVN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01255 463 PANTHER POLYGALACTURONASE QRT3 177 461 IPR039279 GO:0004650
Aip04g01255 463 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 177 461 - -
Aip04g01255 463 SMART pbh1 242 263 IPR006626 -
Aip04g01255 463 SMART pbh1 156 184 IPR006626 -
Aip04g01255 463 SMART pbh1 337 358 IPR006626 -
Aip04g01255 463 SMART pbh1 185 207 IPR006626 -
Aip04g01255 463 Gene3D - 88 463 IPR012334 -
Aip04g01255 463 SUPERFAMILY Pectin lyase-like 87 436 IPR011050 -
Aip04g01255 463 PANTHER POLYGALACTURONASE QRT3 1 176 IPR039279 GO:0004650
Aip04g01255 463 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01255 Aip-Chr4 20806500 20809782 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01255 - - gmx:100804107 685.256