Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01249 ATGAGAAGGGGAAAGAAGCTTGAGCATTTTCCCATTTGGGGATTTAAAAAAGCATCTCGATTTTACTTGAGCTTCTGTCAACACACAGGAGCCTACTTCCCGATTCGCGCCACCATGTCACTACTGAATAAACTACGGTGTGTCACCATAGATGTTACGGGTACCCTAATGGCTTACAAGGGAGAGCTTGGTGACTACTATTGCATGGCAGCCAAGGCAGTTGGCTATCCATGCCCGGATTACAAACGTGTGCACGAGGGTTTTAAGCTTGCCTATAAGGACATGGCAAAGAAGTATCCCTGTTTCGGTTATGCAGCCAAAATGCCAAACATTGTGTGGTGGAAAACTTGCGTGCGAGATTCTTTTGTGAGGGCTGGATATGAATATGATGAGGAGACATTTGAGAAAATTTTCAGACGCATATATGCGGCCTTCGGTTCTTCGGCCCCATACACCGTCTTCCCTGACTCCCAACCATTTCTTAGATGGCTTCGAGGAAAAGGCATAACCGTCGGCATTGTCAGCAACGCAGAGTATCGATATCAAGATGTGATTCTTCCAGCTCTGGGTATAAACCAGAATTCCGAGTGGGACTTCGGTGTGTTTTCCGGTCTGGAAGGCGTGGAGAAGCCGAACCCAAAAATCTATGAGATTGCACTGGAGAGGGCTGGAAACATTGCACCTCAAGAAACTTTACATATCGGTGACAGCATGCGCAAAGACTATGAGCCGGCCAAGAGCATAGGGATGCATGCCCTGTTGTTGGATAGATTTAAGACACCGGATGCCGTGGAGTGGAGGAAAGCCGGTGCAGTTGTCCTCCCTGATTTGGTGGCCACGCAGGAATGGCTATCGTCGGAGAAgggaagggttaatcacgctcggggaggctgggaagagggggaagagaaggtggggaagggaaggggaagggaatccgtcgccgCTGCTCTACATCGTTCGTCGTTGGATCTCGCCGCTGCTCCTCGTCGTTCGGTCATCGCCGTTGCTCCTCGACATCGACGCCAGCAGATTCGCAAGAGTGGACATTGTCCACCACTGCTATTCCTCGTCGTTCAGTCCTTGTCACTGCTGCTCTCATCGTCGTTCGCTCCTCGTCGCCATCGCTGCTCCTCGCCGTCGCCGTCGCTGCTTCTCGCCTCGCTGTTGGATCTCACTGCCAGATATCGCCGCTGCTCCTCTTCCTCGCTCgacgtcgacgccagtagatccacgagTCTGCGCTCTGTCCGAGCCTCACTCTCAGATCCTCTCCTCACCACTGCCGCCACCTCCGTTGCTCACTTTCTAGACTCGCCGGCGAGCTCCTCCTCCTCCTTCAGCGAGTGTCACCTAATCGTCATTGCAGCATCTAGCATCCTCGTCATTGTCAGATTCTCTCCATCCCGCAGACAGTGTCGTCAAAGCTCCTCCTCGCGCGCCATCCCTCCTCCTCCTCGTCAGATCGTCAGCGCCACAGATCTTCCCGTCGCCATGTCTGCCACATATCTACTTGTCGTCGTCTCCGCCACAGCTTTGCGCATCGCCATCTGCACATTGGCAATTTTCTGTCGCCGTCAACTCCATCTCTGGGTCTGCTTCTTGCCGTTGCAGACTGCACCTGCCTCGTCATCTACAGATCTAAGATCATTGGGGATATCCGTGGAAAATGGATATCCAGCGGATATCGGATATCCGTTCAGTCCCCTTGGGGACCCGTTCAATCCCTAA 1731 0.491 MRRGKKLEHFPIWGFKKASRFYLSFCQHTGAYFPIRATMSLLNKLRCVTIDVTGTLMAYKGELGDYYCMAAKAVGYPCPDYKRVHEGFKLAYKDMAKKYPCFGYAAKMPNIVWWKTCVRDSFVRAGYEYDEETFEKIFRRIYAAFGSSAPYTVFPDSQPFLRWLRGKGITVGIVSNAEYRYQDVILPALGINQNSEWDFGVFSGLEGVEKPNPKIYEIALERAGNIAPQETLHIGDSMRKDYEPAKSIGMHALLLDRFKTPDAVEWRKAGAVVLPDLVATQEWLSSEKGRVNHARGGWEEGEEKVGKGRGRESVAAALHRSSLDLAAAPRRSVIAVAPRHRRQQIRKSGHCPPLLFLVVQSLSLLLSSSFAPRRHRCSSPSPSLLLASLLDLTARYRRCSSSSLDVDASRSTSLRSVRASLSDPLLTTAATSVAHFLDSPASSSSSFSECHLIVIAASSILVIVRFSPSRRQCRQSSSSRAIPPPPRQIVSATDLPVAMSATYLLVVVSATALRIAICTLAIFCRRQLHLWVCFLPLQTAPASSSTDLRSLGISVENGYPADIGYPFSPLGDPFNP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01249 576 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 46 254 IPR011949 -
Aip04g01249 576 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 166 249 IPR006439 -
Aip04g01249 576 CDD HAD_dREG-2_like 157 265 - -
Aip04g01249 576 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 48 286 - -
Aip04g01249 576 SFLD Haloacid Dehalogenase 48 286 - -
Aip04g01249 576 Pfam haloacid dehalogenase-like hydrolase 46 248 - -
Aip04g01249 576 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 45 56 IPR006439 -
Aip04g01249 576 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 164 177 IPR006439 -
Aip04g01249 576 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 197 213 IPR006439 -
Aip04g01249 576 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 244 257 IPR006439 -
Aip04g01249 576 PANTHER OS02G0173600 PROTEIN 39 289 - -
Aip04g01249 576 Gene3D - 48 259 IPR023214 -
Aip04g01249 576 Gene3D - 61 146 IPR044924 -
Aip04g01249 576 SUPERFAMILY HAD-like 45 277 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01249 Aip-Chr4 20624555 20637648 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01249 - - gmx:100815659 486.878