Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01238 ATGAGAAGAGTAGAGAAAGGGAGGCTCGGTGACGCGGTGACAGGAGATGAATCAGGAGGGCATGGCGGCACGGCGACACAACTTGGAGAAGGAGGGTGCGACGTCGTGATGAGAGGAGTTGGAGGGAAAGGTCGTGGTGTCACAACGTCAGTGTCTCCTATGACTATGAGACAAGAGCATAGTAGTTCCCCTGGCTCGTTCTCTGAACCTCCACTCTCTTCCTTTCACCTTTCGTTTACCATCTCTTTACGTCACACCCTTTACCCTTCACCCTTCGATTACGATACACAAACCTACCTCCACCCTTATTCAACTACTTCTCTTATATATTCTTCAACTCTTCTCTTTATCATACACAACAACACTTCTTCATCCATGGTGCTTCCTCACTTTCTTCCCTTTCTGCTCTTCTTCTTCCTACTTCTTGTTGCTGATGGCAGGTTCGTGGTGGAGAAGAGCAGCATCACGGTGCTGTCTCCGCACACCATGAAGGCCAAGCACGACGGCGCCATAGGAAACTTCGGTGTTCCTAACTACGGAGGATTCATAGTGGGATCCGTACACTACCCTGACAAAGACTCTCATGGTTGTAAGCCTTTTGAAGGTGATAAGCCTTTCAAGATTCACTCTTATCGCCCCACTATTCTTCTCCTTGATCGTGGAGAGTGTTACTTTGCGTTGAAGGTATGGCATGCTCAAATAGCTGGAGCTGCAGCAGTGTTAGTAACTGACAGCATTGATGAGACCCTAATAACCATGGATTCTCCAGAAGAGAGCAACGATGCAGATGGATACATAGAGAAGATTCAAATCCCCTCGGCGCTGATCGAGAAATCCTTCGGCGACGAGCTGAAGCAAGCACTGAGCAAGAAAGACGAAGTCATGCTTAGAATTGACTGGAGAGAATCAGTGCCTCACCCAGACAACAGAGTGGAGTATGAGCTATGGACTAACAGCAACGACGAGTGTGGCGCTCGCTGCGAAGAGCAGATGAATTTCGTCAAGAATTTCAAAGGACATGCTCAGATTCTTGAGAGGGGAGGCTACACATTGTTCACTCCTCACTACATAACCTGGTTTTGTCCCAAGCCGTTTGTAGAGAGCAGACAGTGCAAATCTCAGTGTATAAATCATGGAAGGTATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAAGGATATGAAGGGAAGGATGTGGTGTATGAAAACTTGAGGCAGTTGTGCGTTCATAGAGTTGCCAATGAGAGTAACCGTTCTTGGGTTTGGTGGGATTATGTAACAGATTTCCATATCAGGTGTTCTATGAAGGAGAAAAAATACACCAAACAATGTGCTGAAGATGTCATGAAATCATTAGATTTGCCTATAGAGAAAATTAAAAAGTGCATGGGTGACCCCGAAGCTGATGTGGAGAATGAGGTGCTAAAGAATGAGCAACTACGCCAGATAGGGCATGGATCTCGTGGCGATGTCACCATCTTGCCAACTTTGGTTATAAACGATGTCCAGTATCGAGGAAAATTGGAGAGATCTGCTGTTCTAAAAGCTGTATGTGCTGGATTCGAGGAGACTACTGAACCTCCAGTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGATGTTGGAAGGATGAGAGGGCTAACATAAGTGCTTGCAGAGATACTTTTAGGGGAAGAGTTTGTGAGTGCCCTGTTGTGAAAGGTGTCCAGTATAAGGGTGATGGTTATACATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCAATAAACAATGGAGGTTGTTGGTCAGAAACTAAAAACAAATTAACTTTCTCAGCTTGCTCAGAATTTATAGTAAATGGTTGTCGTTGCCCAGTTGGATTCCATGGGGATGGATACAAATGTGATGATGTTGATGAATGCAAGGACCGAAGCGCTTGTCAGTGTGATGGCTGCACCTGCAAGAATACATGGGGTAGCTATGATTGCAAATGCAAAGGAAATCTTCTTTACATGAGGGAACAAGATGTTTGTATTGAAAGAAGTGGATCAAGATTTGGGCGGTTCCTCGCATTTTTGGTGATAGCAGTTGTTGCAGCTGCCAGTTTAGCCGGTTATGTATTCTACAAATACAGACTCAGGGCTTACATGGACTCGGAAATCATGGCTATCATGTCCCAGTACATGCCACTAGACCAGCAAAATAATGTAGCTCATGCCGAAACTGAACCTTTACGGTCACAAGGCACTGTATAA 2253 0.4532 MRRVEKGRLGDAVTGDESGGHGGTATQLGEGGCDVVMRGVGGKGRGVTTSVSPMTMRQEHSSSPGSFSEPPLSSFHLSFTISLRHTLYPSPFDYDTQTYLHPYSTTSLIYSSTLLFIIHNNTSSSMVLPHFLPFLLFFFLLLVADGRFVVEKSSITVLSPHTMKAKHDGAIGNFGVPNYGGFIVGSVHYPDKDSHGCKPFEGDKPFKIHSYRPTILLLDRGECYFALKVWHAQIAGAAAVLVTDSIDETLITMDSPEESNDADGYIEKIQIPSALIEKSFGDELKQALSKKDEVMLRIDWRESVPHPDNRVEYELWTNSNDECGARCEEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVESRQCKSQCINHGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKKYTKQCAEDVMKSLDLPIEKIKKCMGDPEADVENEVLKNEQLRQIGHGSRGDVTILPTLVINDVQYRGKLERSAVLKAVCAGFEETTEPPVCLSGDIETNECLERNGGCWKDERANISACRDTFRGRVCECPVVKGVQYKGDGYTSCEAFGPARCSINNGGCWSETKNKLTFSACSEFIVNGCRCPVGFHGDGYKCDDVDECKDRSACQCDGCTCKNTWGSYDCKCKGNLLYMREQDVCIERSGSRFGRFLAFLVIAVVAAASLAGYVFYKYRLRAYMDSEIMAIMSQYMPLDQQNNVAHAETEPLRSQGTV 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01238 750 MobiDBLite consensus disorder prediction 47 70 - -
Aip04g01238 750 CDD EGF_CA 636 665 - -
Aip04g01238 750 Gene3D - 145 307 - -
Aip04g01238 750 Pfam PA domain 185 284 IPR003137 -
Aip04g01238 750 MobiDBLite consensus disorder prediction 1 33 - -
Aip04g01238 750 ProSitePatterns Calcium-binding EGF-like domain signature. 636 662 IPR018097 GO:0005509
Aip04g01238 750 SUPERFAMILY PA domain 213 304 IPR046450 -
Aip04g01238 750 Gene3D Laminin 530 586 - -
Aip04g01238 750 SMART egfca_6 636 678 IPR001881 GO:0005509
Aip04g01238 750 MobiDBLite consensus disorder prediction 48 70 - -
Aip04g01238 750 Gene3D Laminin 592 678 - -
Aip04g01238 750 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 132 726 - -
Aip04g01238 750 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 132 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01238 Aip-Chr4 20465961 20474633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01238 134 747 Miscellaneous Gene Families AT1G30900 71.313 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01238 - - aip:107639095 1424.45