Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01224 ACTCCCAAGTCACAAACTCACAACCCTAATTTCCTCTTCGAAGCCAATCCCCACCTCCAAGGCTGGAACGCCACTGTCACCTCCAACAAACGCCTAATCGAAGCTTCACCTTCGCAGACGAGGGATCTTCTGGTCGTCGTCGGCCGTCTAGTCATCGTCGGGCATTTGGTCGTCGGCTTGTCATCCTTGTCATCGGCATCGTCTGGTCGTCGTCGGGCATCTGGTCGTCGTCGTCTGGCTGTGCTCTTCCGCGTTGAGTATTCTAACCCTTTTAGTTCTTCTTCCAAGAGCATGGACAACCTTCATTATCTCCTACCTGGCGGTGGCGCTAGTGGCGGTGGCGCCCCTCCCCTCACGCTCCATCAACATTACCGCCGTCCTCTCCCCCTTCCCAGACTTCTCCCAATTCACCGCCTCCTCTCCCTCTCCGACCTCCACTCCCTCCCTCCCTCCGGCAAGCTCTTCACCACTCTCTTCCAAACCACTGGCCGGGCCCCCTCCAACTCTGGCTCCCTTAACCTCACCCGCGACCCTCGAAACGGCATCGTTACGATCACTTCCCCTTACTCCCCTTCCTCAAACGCCACCGTTTTGTCCTTAGTCAAAACCTTACCTTATAACGTCACTGTTTTCTCCGTTGATAACCTCATCCTCCCTTTCGGCCTCGATCTCATGGCCTCGGAGACTCACCCCAATCTAGGGCTCAACATCACCAAGGCCTTAATCGACGGCAAGAACTTCAACGTCGCCGCCTCCATGCTCGCAGCCTCCGGCGTCGTCGAAGAATTCGAGGCCGACGAGGGCGGCGCTGGAATTACTATGTTCGTCCCCGTCGACGATGCATACGCCGATCTGCCTCCAGCCGTTAGCTTGCAATCCCTTCCGGCGGATAAGAAAGCCGTCGTGCTCAAATTTCATGTGCTGCATTCGTATTACCCCTTGGGATCGTTGGAATCGGTGGTGAACCCTCTTCAGCCGACGCTCGCGACGGAGGCCATGGGTGCTGGGAGCTTCACGCTCAATATTTCCCGCGTGAACGGCTCCGTTGCGATCAACACTGGGATCGTGCAAGCTTCCGTGACGCAGACGGTGTTTGATCAGAACCCCGTGGCAATCTTCGGCGTCTCGAAGGTTCTGCTGCCGAGGGAGATCTTCGGGAAGAATCCGATCACGACGCCGAAGCTTGGATCGACTGCACCGCCTCCGGAAGACGATGCTCTGTCACCAGAGGGGTCGCCGGGGGCAATGGATGGCCAGCCTTCGCACCTCTCGTCGCCGCCCGGGTTCCGCGAGGACATGCAGTCCAACGCTGCTGCCTCCGGTGTTCGTGGTTCCAAATTCAAGTCTTCCATTGTTGTTGCTGTATTTGTTTGCTGTGTTGCACACACGAATTGTCTCCGCCTTATCGAGCGGCATATTTCAGTTGGCTTCTGCAGGATACCTCAGTTCTCATCCACGCTGGAGTTTGCGCAGTTTGCTCGACATCTTACCTCGATGACCATCAGCTTTTGCTGCGGAGAACTGTATTGGGAATTCTTGTTGTAG 1545 0.5644 TPKSQTHNPNFLFEANPHLQGWNATVTSNKRLIEASPSQTRDLLVVVGRLVIVGHLVVGLSSLSSASSGRRRASGRRRLAVLFRVEYSNPFSSSSKSMDNLHYLLPGGGASGGGAPPLTLHQHYRRPLPLPRLLPIHRLLSLSDLHSLPPSGKLFTTLFQTTGRAPSNSGSLNLTRDPRNGIVTITSPYSPSSNATVLSLVKTLPYNVTVFSVDNLILPFGLDLMASETHPNLGLNITKALIDGKNFNVAASMLAASGVVEEFEADEGGAGITMFVPVDDAYADLPPAVSLQSLPADKKAVVLKFHVLHSYYPLGSLESVVNPLQPTLATEAMGAGSFTLNISRVNGSVAINTGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGKNPITTPKLGSTAPPPEDDALSPEGSPGAMDGQPSHLSSPPGFREDMQSNAAASGVRGSKFKSSIVVAVFVCCVAHTNCLRLIERHISVGFCRIPQFSSTLEFAQFARHLTSMTISFCCGELYWEFLL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01224 514 SMART fasc_3 273 382 IPR000782 -
Aip04g01224 514 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 140 442 - -
Aip04g01224 514 Pfam Fasciclin domain 246 381 IPR000782 -
Aip04g01224 514 ProSiteProfiles FAS1/BIgH3 domain profile. 234 379 IPR000782 -
Aip04g01224 514 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 140 442 IPR033254 -
Aip04g01224 514 MobiDBLite consensus disorder prediction 390 430 - -
Aip04g01224 514 SUPERFAMILY FAS1 domain 241 381 IPR036378 -
Aip04g01224 514 Gene3D FAS1 domain 235 382 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01224 Aip-Chr4 19963248 19969816 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01224 - - aip:107639086 627.861