Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01200 ATGGCTGCTTTGTATTCCAGTGTCACAGAGGAGGATCTGAACGGTTTTAGGTTCTCAATCGATCAAATTCAAACTCAAGTTGTCAAGCTAGAGAAACAAGTAAATGAAGTTGAACAGTTCTACCAATCCAACGATTTTAAAGTTAATAATTCCAAAAACAAGGGTGAAAATAAGCATCTTATTGGAACTAAGAAGTCACTGCAAGGTGATTCACACAATGAAGCTGATGCTGATGCTGCAAAAGGAAGGGAAGAACTCATGCGCCAGTTTTCCGTTATATTGCGTCAGATTACTCAGCATGAATGGGCTTGGCCTTTTATGGATCCTGTAGATGTTGAAGGTCTGGGACTGTATGACTATTATGAGGTTATCAATAAGCCTATGGATTTCAGCACAATAAAAAGAAAAATGGAAGCTAAGGATGGCTCTGGTTATAAGAATGTCAGGGAGATATATTCTGATGTAAGGTTGATTTTTAAGAATGCAATGAAATACAATGATAAAAAGAATGAAGTCCATGTTATGGCGAGAACCTTGCTGAACAAGTTCGAAGAGAAATGGCTGCTCCTGTTGCCTAAAGTTGACCAAGAGAGGAGACATTTAAAGGAAGAAGCGGATGCACAGTTGGAAACACAGCTCGCACAAGAAGCAACTTATGCCAATATGACTAGGGATTTATCTGTTGAGCTGGACAAGGTTGATGTGCATTTGAAGAGTCTTAAAGCATTGGTTATTCAAAACTGCAGGAAACTCTCATCTCAGGAGAAAGTTCTACTTGGGACAGCTCTCCCAAGGTTGTCTCCTGAATACCTCATCAGAGCATTGCAAATAGTTCATGAAAACAATCCAAACTTCCAACCTAATGCTGAAGTTGTGGAACTTGACATTAATTCTCAGAACGACTACACACTGTGGAGGTTAAACGTTTTTGTCAAGCATGCATTGAAAGTTCAGGGAAGAACTGCTGAGGGCACAGGTGTTGACCATAGTAATAAAACCGAGAACAAGAACTACTCCAAAAGGAGGAGAATTTTGTGA 1038 0.3969 MAALYSSVTEEDLNGFRFSIDQIQTQVVKLEKQVNEVEQFYQSNDFKVNNSKNKGENKHLIGTKKSLQGDSHNEADADAAKGREELMRQFSVILRQITQHEWAWPFMDPVDVEGLGLYDYYEVINKPMDFSTIKRKMEAKDGSGYKNVREIYSDVRLIFKNAMKYNDKKNEVHVMARTLLNKFEEKWLLLLPKVDQERRHLKEEADAQLETQLAQEATYANMTRDLSVELDKVDVHLKSLKALVIQNCRKLSSQEKVLLGTALPRLSPEYLIRALQIVHENNPNFQPNAEVVELDINSQNDYTLWRLNVFVKHALKVQGRTAEGTGVDHSNKTENKNYSKRRRIL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01200 345 ProSiteProfiles NET domain profile. 241 322 IPR027353 -
Aip04g01200 345 PANTHER OSJNBA0053K19.4 PROTEIN 6 342 - -
Aip04g01200 345 PANTHER TRANSCRIPTION FACTOR GTE1-LIKE ISOFORM X1 6 342 IPR017413 GO:0005634|GO:0006355
Aip04g01200 345 Pfam Bromodomain extra-terminal - transcription regulation 251 312 IPR027353 -
Aip04g01200 345 Coils Coil 20 40 - -
Aip04g01200 345 SMART bromo_6 79 192 IPR001487 GO:0005515
Aip04g01200 345 ProSiteProfiles Bromodomain profile. 98 173 IPR001487 GO:0005515
Aip04g01200 345 Gene3D - 44 212 IPR036427 GO:0005515
Aip04g01200 345 PRINTS Bromodomain signature 117 133 IPR001487 GO:0005515
Aip04g01200 345 PRINTS Bromodomain signature 101 114 IPR001487 GO:0005515
Aip04g01200 345 PRINTS Bromodomain signature 154 173 IPR001487 GO:0005515
Aip04g01200 345 Pfam Bromodomain 93 177 IPR001487 GO:0005515
Aip04g01200 345 SUPERFAMILY Bromodomain 81 195 IPR036427 GO:0005515
Aip04g01200 345 MobiDBLite consensus disorder prediction 321 345 - -
Aip04g01200 345 MobiDBLite consensus disorder prediction 327 345 - -
Aip04g01200 345 Gene3D - 245 321 IPR038336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01200 Aip-Chr4 19368038 19372275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01200 - - gmx:100818490 410.994