Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01138 ATGATAGACCTCAAGTACATTTGGGTTCTTGTTTCAATCAACAGATACGTTCATGAAACCTTGTCAAATGAGAGAACAAGGAATGCTCTAAAGCTGAAATGCACCTCAAAACTAAGGATTCAAAAGCAAGAGTTCTTTGAATTCTCTGAGCAATCAGTGCTATCCAATTTGTACTGGGGAATTGACAGCATTGAAGCTGCAATTCAAGCTCAGAAGCCAGAGGAAAAGTCCTTCAGGCTCATGAACTCAGAACAAATGCTTCAGGTACCAGCAATGCTTGATGAGGAAGAAGTAACCGCCACGGTTTCAAACCGTTACTTGGTGTGCTGCTCCTATTTTTACCTCTCAGTTGTTAGGAACCTGCAGGGTGATGAGTGGCAATCTGCACTGCATTTTCTTCAAGCTGTGTTGGTGTCACCAAGGATTGTTTGCAATGAATTTGCAACTGAACTTTCTCAGAGCCTTTTCCCTCAAGAAACCATCATGTTGCTGAGAAGGAAGAAGCAGAATGTGAAGAACAACAGTGGAAGCATGAGGTTGGGGTGTGTGAGTTCTACTTCTGAGGATGAAGTGAATGAAGCAATTAGGGATATTGCAAGAAGTTATAAGGAAGGTTTGGTGTATTATCAGGTTATGCTTTATGGAGAGAATCCATGGTGGAGAAGTTATTGCAGCACCAAACACCAATCACCACAATATGTGGATGCACCAAATACCAGCTGTGTTTCTCCTAATTCATTTCAACATGAACCAAGATTGAAAACCTGCAATATGTATGATAAAGTTCATCCACTTGGTCCCCAAGATGTGATGCATAATATGGAAGACAGAAAATTTCACATAAGAGCCAAAATAACAAAAGCAAATGATCTACAGAGAGAAACTTATGACAGGAAGCTACATCAATCCTATGCCTTGGATCATGCTGTGAAATATTCCGGGCAAGAACAGCTGAATGAAAGAAGTGTGGTTAATTTTGATTCGACCATATTCAACAGAGCCAGAGAAGATTCTACTTTATCCATCTCAAATTTCCATGTAGATGATGGAATAATTGAGGAAGCATTGCAGCCACTAAAATTCCATCTCTTTGACAATGTAACATCTAAATCTCCTTCCAAACATTGGCTCAGCCAGAAAGATCATGAAGAAAGTTCTAAAACAAAATCACGAAGATATTCCCTACAGGATCTTTCAGGAGTGATTGAAAGAATCTCAGAACTGCATTATTCAGAAGCATTAGGAAAGTGTGGACAAGAATATACGGTTGACATTGCATCTATCTACGAGTATTTGACCGATTCATCAGGCACTAGTTATGCTTCCTTGAGGGATGCCATCTTGGATGAACTGCTAGTAGCTATCTCAACATCCAAAGAGGAAAGAGAAATTAGAGCTTCTGTGTCTATTCTCACTACAATAATTTCAAGAAACAAATCAGTCATAGAAGACATCAAGAAGAAAGGTTTAAAGTTGTGTGATCTTGCTAGTGCTCTAAAACAAAATGTTCATGAGGCTGCAATTCTCATCTATTTGATAAATCCATCACCTATAGACATAAAAACATTGGAACTTCTACCAATACTTGTTGAGATTGTATGCACCTCACATAGTTACAAGAATAAGCCAGAGCCCCTTCTTCTGACGCCTCATGCAGCATCATTGATGATCATTGAAGAACTAGTGACTTCGTTCGACTATGCAACAAATAACATGCATTTGGCTGCGATTAGTTCCCCTCATGTTCTCAGTGGACTTCTAGAAGTTGCTAGGAATGATAATCTAGAAGAGTTTTTCTCTTTAACCACCATTCTTATAAAATGCATGCAGTTTGATGCACAATGTAGACAGTATGTATCACAATACACTCCTCTTGCTCCTTTTATCCATCTTCTGCAGACGGAAAATACCCGCGCCAAATGTATGGCACTTGAATTTTTCCATGAAATCCTTTGCATACCGCGATCATCAGCCATTAATCTGTTGCAGCGTATACAGCAAGAAGGAGGCATCAATGTTATGCAGATACTAAGGATTTGTACTCATCAATTACAACCTGATCACCAGCTTTTTGCAGTAAACATACTACTTCAGTTAGAAACATTGAACCCATGTGATAAAAGCTTGTTCAGAGTAGAAGCAGTGAAGGTCCTTCTAAGGGCATTGGTATCTCAGGAAAGCTCAGCGCAGATATTATCTGCATCCATTTTATCAAATCTTGCAGGAACATATGCGTGGACAGGAGAACCATATACAGCTGCATGGTTGCTGAGGAAGACAGGATTGAACTCTCCCTATCACCACAATATGATAAGAAACTTCAACTGGTTGGATCAGAGTCTACAGGATACTGGCACAGACTTATGGTGCAGTAAAATTGCAAAATCTATGTTAAGTGTTGGAGATTCCATCTTCCATGCTTTAGAGAGTGGATTAAGAAGCAAGATGAAAATGGTCTCTAGAGATTGTCTTGTAGCAATTTCATGGCTCGGATGTCAAATATCTAAAAGCTCGGATAGCCTCAGATATTCGGCATCCGAGATCATACTGAGTGGAATTGAGCAATTCCTGCATCCTGGGATGGAGCTAGAAGAAAGACTTCTAGCATGTCTATGCATTTATAATTATGCCACTGGTAAAGGAAAGCAGAAACTGATTCATTTCTCTGAAGGAGTAAAGGAATCGTTACGACGTCTTTCAAATGTAACTTGGATGGCTGAGGAGTTACACAAAGTAGCTGATTTCCTGTTGCCAAACATATCACGTATTTCTTGTGTTCACACGCAAATCCTTGAGACAAGTCGAAACTTCAACATAGCAGTTTTCTCCCTCATATACTACAAGGGACTCCTATTCAGTGGATATTCAGATGGTTCAATCAAGGTGTGGGATATTAGAGGGCACTCAGCTAGTCTTGTATGGGACATTAAGGAGCACAAGAAGTCCGTGACATGCTTTTCGCTATCTGAACCATCGGATAGCCTCTTAAGTGGATCCACCGATGGAACCATAAGGGTGTGGAGAATGGTCCAGAGAAAGTTGGAATGTGTTGAAGTAATAGTCTTCAAGGAACCAATCCATCAGTTACATGCATCGGGTGAAACAATTTTCGCGATTACTGAAAGCCAAGGAATAAAGATAGCTAATGATTCAAGGGCAATCAGAAATATTTTCAAAGGTAAGCATGTAAAATGCATGACACTAACTAGAGGAAAGTTATACATTGGCTGCACAGATTCAAGCATACAGGAGTATTCCACAACATACAACAGGGAACAAGAAATCAAACCACCAACAAGGAGTTGGATCAAGCAAAGTAAGCCAATACATTCAATTGTAGCATATAGAGATTGGCTCTATAGTGCAAGTAAGCATGTTGAAGGCACAACATTCAAGGAATGGAAGAAAAAAATTGGGAAACCCAAGATTTCAATCCATTCTGACAAAGGAGATAGTGTGATGGCTATGGAAGTGGTAGAAGACTTCATATACCTAATCTCCAGCTCATCTGCAAATAGCATTCAGATCTGGTTGAGAGGGACACCGAAAAAACTCGGGAGAATATCGGCCGGAAGCAAGATTACAAGCCTTCTTGCCGCGAATGACATTATTCTTTGTGGTACTGAGATGGGACAAATCAAGGGATGGATCCCTTTGTAG 3660 0.4 MIDLKYIWVLVSINRYVHETLSNERTRNALKLKCTSKLRIQKQEFFEFSEQSVLSNLYWGIDSIEAAIQAQKPEEKSFRLMNSEQMLQVPAMLDEEEVTATVSNRYLVCCSYFYLSVVRNLQGDEWQSALHFLQAVLVSPRIVCNEFATELSQSLFPQETIMLLRRKKQNVKNNSGSMRLGCVSSTSEDEVNEAIRDIARSYKEGLVYYQVMLYGENPWWRSYCSTKHQSPQYVDAPNTSCVSPNSFQHEPRLKTCNMYDKVHPLGPQDVMHNMEDRKFHIRAKITKANDLQRETYDRKLHQSYALDHAVKYSGQEQLNERSVVNFDSTIFNRAREDSTLSISNFHVDDGIIEEALQPLKFHLFDNVTSKSPSKHWLSQKDHEESSKTKSRRYSLQDLSGVIERISELHYSEALGKCGQEYTVDIASIYEYLTDSSGTSYASLRDAILDELLVAISTSKEEREIRASVSILTTIISRNKSVIEDIKKKGLKLCDLASALKQNVHEAAILIYLINPSPIDIKTLELLPILVEIVCTSHSYKNKPEPLLLTPHAASLMIIEELVTSFDYATNNMHLAAISSPHVLSGLLEVARNDNLEEFFSLTTILIKCMQFDAQCRQYVSQYTPLAPFIHLLQTENTRAKCMALEFFHEILCIPRSSAINLLQRIQQEGGINVMQILRICTHQLQPDHQLFAVNILLQLETLNPCDKSLFRVEAVKVLLRALVSQESSAQILSASILSNLAGTYAWTGEPYTAAWLLRKTGLNSPYHHNMIRNFNWLDQSLQDTGTDLWCSKIAKSMLSVGDSIFHALESGLRSKMKMVSRDCLVAISWLGCQISKSSDSLRYSASEIILSGIEQFLHPGMELEERLLACLCIYNYATGKGKQKLIHFSEGVKESLRRLSNVTWMAEELHKVADFLLPNISRISCVHTQILETSRNFNIAVFSLIYYKGLLFSGYSDGSIKVWDIRGHSASLVWDIKEHKKSVTCFSLSEPSDSLLSGSTDGTIRVWRMVQRKLECVEVIVFKEPIHQLHASGETIFAITESQGIKIANDSRAIRNIFKGKHVKCMTLTRGKLYIGCTDSSIQEYSTTYNREQEIKPPTRSWIKQSKPIHSIVAYRDWLYSASKHVEGTTFKEWKKKIGKPKISIHSDKGDSVMAMEVVEDFIYLISSSSANSIQIWLRGTPKKLGRISAGSKITSLLAANDIILCGTEMGQIKGWIPL 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01138 1219 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 309 1219 - -
Aip04g01138 1219 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 272 - -
Aip04g01138 1219 ProSitePatterns Trp-Asp (WD) repeats signature. 951 965 IPR019775 -
Aip04g01138 1219 PANTHER OS04G0584500 PROTEIN 309 1219 - -
Aip04g01138 1219 PANTHER OS04G0584500 PROTEIN 7 272 - -
Aip04g01138 1219 SUPERFAMILY ARM repeat 574 921 IPR016024 -
Aip04g01138 1219 Gene3D - 425 911 IPR011989 -
Aip04g01138 1219 Pfam WD domain, G-beta repeat 974 1007 IPR001680 GO:0005515
Aip04g01138 1219 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 976 1009 - -
Aip04g01138 1219 SMART WD40_4 927 964 IPR001680 GO:0005515
Aip04g01138 1219 SMART WD40_4 969 1008 IPR001680 GO:0005515
Aip04g01138 1219 SMART WD40_4 1138 1178 IPR001680 GO:0005515
Aip04g01138 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 976 1009 IPR001680 GO:0005515
Aip04g01138 1219 ProSiteProfiles Trp-Asp (WD) repeats profile. 950 973 IPR001680 GO:0005515
Aip04g01138 1219 Gene3D - 1087 1218 IPR015943 GO:0005515
Aip04g01138 1219 MobiDBLite consensus disorder prediction 375 391 - -
Aip04g01138 1219 MobiDBLite consensus disorder prediction 369 391 - -
Aip04g01138 1219 Gene3D - 924 1086 IPR015943 GO:0005515
Aip04g01138 1219 SUPERFAMILY WD40 repeat-like 947 1216 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01138 Aip-Chr4 17441046 17448463 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01138 - - gmx:100789287 1820.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01138 04 17441046 17448463 Aip04g01138 04 17441046 17448463 ECH