Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01137 ATGACAGGTGCTACGTTGTCGTCGGAGGTTGAACCGGTCGAGCCGCAGTCACTGAAGAAGCTCAGCTTCAAGTCCCTGAAGCGCGCACTCGATCTCTTCTCTCCCACTCACTCTCACCTCGCTCCTCCCGATCCCCACAGCAAGAGAATTCGCACTACCCACAAGGTACTTGTGGAGTATGGTGGAATCAGACTCTCTACTACTCAAGCTCCTCGTCAAGCTAATTCCGCGGCGCAAGGTCAAGCTCAACCGGGGCCATCTAATGCACTTGCTCTTCCGGGTCCAGGAGATTCCAAAGATCCCCAGAAAGGAGGACCCCAAAATGCTTTGGTTGTTGGTCCAACTATGCCGTCAACAGCTTCGAATGATCGTGGTTTTACAGGCAAAAGCACAGCAGTTATTTCTGCTTCTTCTGGTTCATCTGAAAGGAATTTATCCACAGCTGCTTTAATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGATTGGCATGCCCCATGGAAGAATTACAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGCAATACATGGTTTTGTACTGGTTCTGCAGATCGTACCATCAAGATATGGGATTTAGCTAGTGGAAGGCTAAAGCTCACACTGACTGGCCACATCGAGCAAATAAGAGGCCTTGCTGTCAGCAGCAAGCATACTTACATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCCTATCATGGTCATCTTAGTGGTGTCTACTGCTTGGCTCTTCATCCAACAATTGACATTTTACTTACTGGAGGGCGTGATTCTGTCTGCCGGGTCTGGGACATCCGTAGTAAAATGCAAATTCATGCTCTTTCAGGACATGATAATACTGTCTGCTCTGTATTTACACGGGCAACGGATCCCCAAGTTGTTACAGGTTCTCATGACAGCACCATCAAGATGTGGGATCTAAGATATGGTAAAACAATGTTAACCCTTACAAACCACAAAAAATCTGTTAGAGCCATGGCACAACATCCTAAAGAGCAAGCTTTTGCATCAGCATCAGCTGATAATATTAAGAAATTCAGCCTCCCAAAGGGAGAGTTTTTTCACAATATGCTCTCTCAACAGAAAACTATCATCAATACGATGGCTGTCAACGAGGAGGGTGTGATGGTTACAGGAGGTGACAATGGGAGTCTCTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAAGCGCAGACAATTGTGCAGCCTGGTTCCCTGGACAGTGAAGCTGGTATTTATGCTTGTACCTACGATGTAACGGGTTCAAGGCTTATAACATGTGAAGCTGACAAGACAATCAAAATGTGGAAAGAAGATGAAACTGCCACTCCTGAAACCCATCCTCTTAATTTCAGGCCCCCTAAAGACATCAGGCGATTTTAG 1464 0.4617 MTGATLSSEVEPVEPQSLKKLSFKSLKRALDLFSPTHSHLAPPDPHSKRIRTTHKVLVEYGGIRLSTTQAPRQANSAAQGQAQPGPSNALALPGPGDSKDPQKGGPQNALVVGPTMPSTASNDRGFTGKSTAVISASSGSSERNLSTAALMERMPSKWPRPDWHAPWKNYRVISGHLGWVRSVAVDPSNTWFCTGSADRTIKIWDLASGRLKLTLTGHIEQIRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRATDPQVVTGSHDSTIKMWDLRYGKTMLTLTNHKKSVRAMAQHPKEQAFASASADNIKKFSLPKGEFFHNMLSQQKTIINTMAVNEEGVMVTGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYACTYDVTGSRLITCEADKTIKMWKEDETATPETHPLNFRPPKDIRRF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01137 487 Pfam WD domain, G-beta repeat 252 289 IPR001680 GO:0005515
Aip04g01137 487 Pfam WD domain, G-beta repeat 211 247 IPR001680 GO:0005515
Aip04g01137 487 Pfam WD domain, G-beta repeat 296 331 IPR001680 GO:0005515
Aip04g01137 487 Pfam WD domain, G-beta repeat 168 205 IPR001680 GO:0005515
Aip04g01137 487 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Aip04g01137 487 PANTHER BNAA01G27690D PROTEIN 13 487 - -
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 252 - -
Aip04g01137 487 Gene3D - 152 487 IPR015943 GO:0005515
Aip04g01137 487 SMART WD40_4 292 331 IPR001680 GO:0005515
Aip04g01137 487 SMART WD40_4 166 205 IPR001680 GO:0005515
Aip04g01137 487 SMART WD40_4 250 289 IPR001680 GO:0005515
Aip04g01137 487 SMART WD40_4 426 464 IPR001680 GO:0005515
Aip04g01137 487 SMART WD40_4 334 372 IPR001680 GO:0005515
Aip04g01137 487 SMART WD40_4 375 414 IPR001680 GO:0005515
Aip04g01137 487 SMART WD40_4 208 247 IPR001680 GO:0005515
Aip04g01137 487 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Aip04g01137 487 MobiDBLite consensus disorder prediction 70 127 - -
Aip04g01137 487 SUPERFAMILY WD40 repeat-like 163 464 IPR036322 GO:0005515
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Aip04g01137 487 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 13 487 IPR045241 GO:0000398
Aip04g01137 487 MobiDBLite consensus disorder prediction 70 86 - -
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Aip04g01137 487 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Aip04g01137 487 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Aip04g01137 487 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Aip04g01137 487 CDD WD40 169 464 - -
Aip04g01137 487 MobiDBLite consensus disorder prediction 112 127 - -
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Aip04g01137 487 MobiDBLite consensus disorder prediction 468 487 - -
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 210 - -
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 333 - -
Aip04g01137 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 292 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01137 215 463 Miscellaneous Gene Families AT5G08390 21.514 2.26e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01137 K12862 - gmx:100775526 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01137 04 17367904 17376845 Aip04g01137 04 17367904 17376845 ECH