Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01134 ATGATCAAGTTAACACATTTACTCACTGTCACTAACAAGCTTCCTCATTCTTCCAAATCATGCTATTCGATTTGGAACCCTAATCGTTCCTTGTCTCTCTCTTCCCCTTTCCATTCCCACTACTATTCTCTCACAGATCACAGGGTACTCCACAGGGTTCTTGAACAATGCAGAGTTTCCAGGGATTCCAAAACTGCAGCAAAAACCCATGCAAGGCTTGTCGTACTTGGGTATGCTACGTACCCATCACTTGTTTCTTCTCTGGTTTCAACCTATGCTAACTGTCACCTACCCCACATTGCAAATCACGTTGTTCATCATGTTTTCACCCGTGTTTCGAACCTATTCAACATGAACTTGATACTTGAAAGGTTGATGAAAGTTGGGCAATGTGGTGTTGCCAAGAAGGTGTTTGTTAAAATGCCTGTTCGAGATGTTGTTTCTTGGAACACCATGATTGGAGGGTACGTGAAGAACTCGCGGGTTGTTGATGCACTGAGCATTTTCAGGGGGATGCTGAATGCTAAAGTTGAGCCCGACGGGTTCACATTTGCTTCTGTGGTTACTGCGTGCGCACGCCTTGGGGCTCTTGCTAATGCCAAGTGGGTGCATACTTTGATGGTGGAGAAGAGGATTGAGCTGAACTATATACTTAGTGCTGCATTGATTGACATGTATGCTAAGTGTGGTAGAATTGATGTTTCAAAATGTGTTTTTGAAGATGGTGTGCGCAATCATGTGTCAGTTTGGAATGCTATGATTAATGGGTTGGCAATTCATGGGCTTGCTTTGGATGCAGCTGCAGTGTTTTCTAGGATGGAGATGGAAAATGTTTCACCTGATAGTGTTACTTTTATTGGGATTCTGATAGCTTGTAGTCATTGTGGATTGGTTGAAGAAGGTCGCAAGTACTTTGATATGATGCAGAATCAATTTTTAATTCAGCCGCAACTTGAGCATTATGGAACCATGGTTGATCTGTTAGGACGATCAGGGCTTTTGGATGACGCGTATGACATGATTAAAGCAATGCCAATTGAGCCCGATGTTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAAACCATAGAAAGAAAGAACTTGGTGAAGTTGCAATTGCCAATATATCACGTCTTGAGAGTGGTGATTTCGTCCTGCTATCGAATATGTATTGCTCTTTAAAGAACTGGGATAGTGCTGAGAGGGTGAGACAGATGATGAAAAAGGGAGGAGTTCATAAAAAACAGGGTAAGAGTTGGATTGAATTGGGGGGCAGCATTCACCAATTCAAGGCAGCCAATCACTCGCATGCTGAAATGAAAGCAATTTACAGTGTGTTGGAAGGACTGAACCAAAGGGCTAAGCTGGAAGGCTTTGCTCCCATGACAGAGTTGGTTTTGATGGATGTTTCCGAAGAGGAGAAAGAGGAAAATTTAAACTTTCATAGTGAGAAGTTGGCCTTGGTCTATGCCGTGTTGAAAACTAGCCCTGGAACTAAAATCAGAATTTTCAAGAATCTTCGTATCTGTCAAGACTGTCATAATTGGATAAAAATTGTGTCCAGAATATTAAACAGAGAAATAATCGTGAGGGATCGCATCCGTTTTCACCAATTTGAAGGTGGTTTTTGCTCTTGCAGAGACTACTGGTAG 1653 0.4229 MIKLTHLLTVTNKLPHSSKSCYSIWNPNRSLSLSSPFHSHYYSLTDHRVLHRVLEQCRVSRDSKTAAKTHARLVVLGYATYPSLVSSLVSTYANCHLPHIANHVVHHVFTRVSNLFNMNLILERLMKVGQCGVAKKVFVKMPVRDVVSWNTMIGGYVKNSRVVDALSIFRGMLNAKVEPDGFTFASVVTACARLGALANAKWVHTLMVEKRIELNYILSAALIDMYAKCGRIDVSKCVFEDGVRNHVSVWNAMINGLAIHGLALDAAAVFSRMEMENVSPDSVTFIGILIACSHCGLVEEGRKYFDMMQNQFLIQPQLEHYGTMVDLLGRSGLLDDAYDMIKAMPIEPDVVIWRALLSACRNHRKKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRQMMKKGGVHKKQGKSWIELGGSIHQFKAANHSHAEMKAIYSVLEGLNQRAKLEGFAPMTELVLMDVSEEEKEENLNFHSEKLALVYAVLKTSPGTKIRIFKNLRICQDCHNWIKIVSRILNREIIVRDRIRFHQFEGGFCSCRDYW 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01134 550 Pfam DYW family of nucleic acid deaminases 458 550 IPR032867 GO:0008270
Aip04g01134 550 Gene3D Tetratricopeptide repeat domain 236 446 IPR011990 GO:0005515
Aip04g01134 550 Gene3D Tetratricopeptide repeat domain 98 234 IPR011990 GO:0005515
Aip04g01134 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Aip04g01134 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 496 - -
Aip04g01134 550 Pfam PPR repeat 283 309 IPR002885 -
Aip04g01134 550 Pfam PPR repeat 249 277 IPR002885 -
Aip04g01134 550 Pfam PPR repeat 320 344 IPR002885 -
Aip04g01134 550 Pfam E motif 363 422 IPR046848 -
Aip04g01134 550 PANTHER OS07G0578800 PROTEIN-RELATED 24 496 IPR045215 GO:0003723|GO:0009451
Aip04g01134 550 TIGRFAM PPR: pentatricopeptide repeat domain 147 180 IPR002885 -
Aip04g01134 550 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Aip04g01134 550 Pfam PPR repeat family 144 193 IPR002885 -
Aip04g01134 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01134 Aip-Chr4 17357127 17359054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01134 86 550 Glycoside Hydrolase AT3G49170 37.131 1.92e-103 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01134 - - lang:109344997 859.751