Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01100 ATGGCACCCCATGCAGAACTTGCAAAGATTGGTTATGAAATAGAGAAACTCTTTGGAAGGCAGAAGAGTTTTGGAAGCAGCAACAACAACAACCCTAATACTTCTCCATCAGCAACTCATCAAAATCTATGCCAATACAAATTCTACCCAGCATACGGAAGCAAAGTTGTGCACATGCATGTTGAAGACATCACGTGCAATGAAGCTGCTTCAAGATTTATTGCTGATAATAGAACAGAACTTCACAGGAAAGTGGCTTGTTTTGTGGTAGAAGGTAATGAAAGAGCAAGGCCAATTGCTGGGCCTGATATCTATGAGGGTCGCAATGTAGCTAAGGATGTTCTTGCTCCTGGTGAGATTATTAATAATGTCATGAGCTTTGGTGCCAAACCTGATGGAAAGTTTGATTGCACTCAGGCGTTCATGGACGCATGGAGAGCAACATGCAAGTCGAAAGTGCAAGCAAGGGTTCTGGTCCCTCTAGGAAGGTTCGTGGTTTCGGCAATGTACTTCGCCGGGCCGTGCACCACTCCGGGGCCCGTCACGGTCCAAGTTGAAGGCACCGTCGTTGCAACAACCGACATCAGCGAGTATGTTGACGGCGAATGGCTCATGTTCCAAGACCTCTCCGGTATCAAACTCATTGGTGGTGGCACCTTTGATGGACAAGGAAAAGATTCATGGTCCCAAACTGAGAATTGTGAAACCGACTCCGATAGCGCCTGTGTTAGAGCTCCTAGTAGCATTTTCTTCAGCAGGGTGAACAATGGAATCATACAGAACATAAAAACCTTGAACCCCAAAGGCTTTCACATATTTGTCACAAACTGTGCCAACATTAGACTTAGGTTGCTTAAGCTCACAGCACCAGGTACCAGCCCCAATACCGATGGAATCCACATTAGCCACTCCATCAATGTCAAAATATCAAAATCCAACATTGAAACTGGTGATGATTGTGTCTCTATGATTCAAGGGGTCAACAATGTTACCATTAAGAGACTAAAGTGTGGCCCCGGACATGGTATTAGTATTGGTAGTCTTGGAAAATATCAAGATGAGCTAGAAGTGAGAGGAATTAGGGTGGAGAATTGCACATTGGTTGGCACAACCAATGGCCTAAGAATAAAGTCATGGCCAGAGAAGTATTCAGTGGATTTAAGGTGTAGTAAGCAATTCCCATGCGAAAATATTCAACTTCACAACATAGACCTCAAGCTTCTTGGACCTATCCTTCCTTCTGGCGCAAGATGTGCCAATGTTAAACCTGTCTATGGAGGCATTCAAATGCCACCAGCATGTCCATAG 1308 0.4465 MAPHAELAKIGYEIEKLFGRQKSFGSSNNNNPNTSPSATHQNLCQYKFYPAYGSKVVHMHVEDITCNEAASRFIADNRTELHRKVACFVVEGNERARPIAGPDIYEGRNVAKDVLAPGEIINNVMSFGAKPDGKFDCTQAFMDAWRATCKSKVQARVLVPLGRFVVSAMYFAGPCTTPGPVTVQVEGTVVATTDISEYVDGEWLMFQDLSGIKLIGGGTFDGQGKDSWSQTENCETDSDSACVRAPSSIFFSRVNNGIIQNIKTLNPKGFHIFVTNCANIRLRLLKLTAPGTSPNTDGIHISHSINVKISKSNIETGDDCVSMIQGVNNVTIKRLKCGPGHGISIGSLGKYQDELEVRGIRVENCTLVGTTNGLRIKSWPEKYSVDLRCSKQFPCENIQLHNIDLKLLGPILPSGARCANVKPVYGGIQMPPACP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01100 435 SMART pbh1 327 347 IPR006626 -
Aip04g01100 435 SMART pbh1 357 378 IPR006626 -
Aip04g01100 435 SMART pbh1 277 303 IPR006626 -
Aip04g01100 435 SMART pbh1 304 325 IPR006626 -
Aip04g01100 435 PANTHER - 385 434 - -
Aip04g01100 435 PANTHER - 89 384 - -
Aip04g01100 435 PANTHER POLYGALACTURONASE 385 434 - -
Aip04g01100 435 PANTHER POLYGALACTURONASE 89 384 - -
Aip04g01100 435 Pfam Glycosyl hydrolases family 28 149 381 IPR000743 GO:0004650|GO:0005975
Aip04g01100 435 ProSitePatterns Polygalacturonase active site. 334 347 IPR000743 GO:0004650|GO:0005975
Aip04g01100 435 SUPERFAMILY Pectin lyase-like 121 434 IPR011050 -
Aip04g01100 435 Gene3D - 116 430 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01100 Aip-Chr4 16524142 16530009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01100 114 403 Glycoside Hydrolase AT4G18180 43.377 3.42e-77 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01100 K01213 - gmx:106796220 517.694