Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01084 ATGTGCTTTGAAATAAGGAAGCAGAAATATCTCGAAGCCTTGGACAGTAAGGAGAAAACAAGAGCTCTTGAAATACTGGGGAAGGATTTGAAAGTGTTCCAAACATACAATGAAGAATTATACAGAGAAATCACATATCTGTTAACCCTTGAAAACTTTAGGGATAATGAACAGTTATCAAAATATGGGGATACCAAAACAGCTAGGAAAACAATGATAGTAGAGCTTAAGAAACTGATTGACGCAAATCCCCGTTTGAATGACAAGCTTGTATTTCCTTCATTGAAGCCATCAAGGTTGCGAACACTTATTAATCAGAGTCTAAATTGGCAACATCAGCTTTGCAAGAACCCAAAGCCGAATCCGGACATAAGGACTCTATTCGTTGACCACACATGCTCTCCTCCTGGTCCGGCCGGTGCAAGCTCAGCCGCGGCAAGGTCACCATCAGTCCCAGCAGCTGTTAATCCTTCTGCGGTTGCGGCTGCGACTGGGGCCGGGACGTCTGTTCCCTTGAACCAAACCTTAGTGTCTGCATTGAAGCATTCCAGGACACCACCTACTCCTACGAATGACGAGCAGCGAGGAAAACGGTTGCGATCTGTTCCACAAGCAACAGAGACGACGAATTCTGGGATGGTCCGTCAACAAGTCCCTCGGTCTTTTGATGACCTTACTAGAACGTTGTTTTGTACATTGAATCAAGGATCAACGGTTACAAGCATGGATTTTCATCCTTCTCTTCATTCCTCACTTCTTATTGGAACTGTAAGTGGTGAAATTTCATTCTGGGAAGTAGGGCGCAATGAGAGGCCAATCTTAAAGCCTTTTGCCATTTGGAACAGTGCTACTTGCTCGGTCTTATTTCAGGCTGCGTATGCCAAGGACTCGAATATATCCGTTTGCCGTGTATCATGGAGCGCTGACGGCAGATATCTTGGGGTTGCTTTCACAAAGCATTTGGTTCATCTGTATACTTATCAAGCACCTAATGACTTAAAAGAGCATTTGGAGGTTGATGCTCATGTTGGCAGTGTCAATGATTTGGCGTTTTCTTCCCCACACAAACAGCTATGCATGGTAACTTGCGGGGATGATAAGCTCATAAAGGTGTGGGACTTAACCGGACACAACCTGTTTAACTTCCAAGGTCACGAAGCAGCGGTTTATTCTATTTGTATGAATGTGAAGGAAAACGTTGAGTACATATTTTCAAGTAGTGTTGATGGAAAAATAAAGGCATGGTTGTTTGATAACTCGGACACAAAAGTGGAATTTGATGCTCATGGAAAATACTGCACCACAATGCTCTATAGCGCCGATGGAACTAAATTGTTTTGTTGCGGGATAAGTAAAAACAATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAATGATGGAGTTATAAAGAGAACCTATGCTGGATTCGGAAAGAAATCGATGGGCATGATGCAATTCGACACGACCAAGAATCGCTTCTTGGTTGCCGGCGAAGACAAGCTGATAAAGTTCTGGGAGTTGGACAACCCTAATATTCTAGCTAGTGTACATGTTGATGGCAATTTATCAAGTGTTCCCCGAGTGAGGTTTAATAGGATCGGGAGTCTGCTTGCTGTAACCACCGCAGATGGCAGGGTAAAGATTTTTGCTAACGCCGACGGCATCAAGCACTTAAGGGCCATTCAAGCTTGGTCTTGCCGGGTTTCGTCCAAAGCGAATACCAATCCAGCCATGACTCATTTGGAACTCGGAGAGAGTAGCTCTGCTCGTAGATCTAAATCTTTTACGGAATTACCAGAAATACTTAAATGTCAAATGATTACTCTGCCCGATACCATGTATCCCACAGCCAAGGTTGCTCGTCTTGTCTACATGAATAACGGAGTTGGCCTTCTCGCTGTTGGTTCCAATGGGACTCAGAAGCTGTGGCGATGGAATCAAACTGAATTGAATCCTACTGGAAAGGCGATGGCAAGTGCTTGTCCAGTACTTTGGCGACCGAATTCCGGTTTTGTCATGACAAACGATGTTCCAGAAAATTCAGAAGGCGCAATTCCTTGTGCAATCATCTCAAGGAACGATTCTTATGTTTTGTCAGCATGCGGAGGAAAACTTACACTTTTCAACATGCTCTCATTTAAGGTAATGGTGAGTTTCATGTCGCCACCACCTCGTTCAACTTGCCTTGCATTTCACCCTCAAGATAATAACGTTGTTGCAATTGGAAAGGAAGATTCCTCCATCCATATTTACAACATTCAGTCGGAAGAGGTCAAAGCTAAATTGACTGGCGATGAGAAGTGCATCACTAGTTTAGCTTTCTCAATGCTGCTGGCTGTCTTGGTTTCATCAGATGCCGATGCTCAGATCTTCTTTTGGAGCACTGACACATGGAATTTGAAGAAATCATTGAAAATGTATTTGCGCGACGAAAGTCCAGTTACCGGCGATACTCAAGTGCAATTTCACTGTAATCAGATAAACTTGCTGGTATGCCACCGCGAGGTGCTAAGTCTATATGATGCATCAAGAATGGAACTGGTTATGCAGTGGGTTCCAAAGGCTCATATGTCCGGTTCCATATCATGTGCTACATACTCGGGCAATGGCAAATTGATCTATACTGCTCTCACCGATGGCAACATTGTAATATTTAATGCTGACACCTTGATGCTACGATGTCGTATCGCTCCATCTGTTTACCTCATGACCCCAAACATACCAAATAGCGAAAATGTGTATCCGGTTGTACTTGCAGCAAATCCACAGGAGCCGAATCAATTTGCAGTTGGACTGTCCAATGGAGCTATTAAGGTCATTGAGCCCAACGCTTCTCGTCGAGGGAATAATGGTATTGGTAGCTGGGTGGGAAAATTTAAACGCGCGGGAAAACCTCCGCGCAACGGCGGCCGAGCATGCAGCAGTGCCATGGAGGAGACAGTGTCTGATGATGGAAACAGTGGTGCAAATACAATATAA 2979 0.4414 MCFEIRKQKYLEALDSKEKTRALEILGKDLKVFQTYNEELYREITYLLTLENFRDNEQLSKYGDTKTARKTMIVELKKLIDANPRLNDKLVFPSLKPSRLRTLINQSLNWQHQLCKNPKPNPDIRTLFVDHTCSPPGPAGASSAAARSPSVPAAVNPSAVAAATGAGTSVPLNQTLVSALKHSRTPPTPTNDEQRGKRLRSVPQATETTNSGMVRQQVPRSFDDLTRTLFCTLNQGSTVTSMDFHPSLHSSLLIGTVSGEISFWEVGRNERPILKPFAIWNSATCSVLFQAAYAKDSNISVCRVSWSADGRYLGVAFTKHLVHLYTYQAPNDLKEHLEVDAHVGSVNDLAFSSPHKQLCMVTCGDDKLIKVWDLTGHNLFNFQGHEAAVYSICMNVKENVEYIFSSSVDGKIKAWLFDNSDTKVEFDAHGKYCTTMLYSADGTKLFCCGISKNNGDSFLVEWNENDGVIKRTYAGFGKKSMGMMQFDTTKNRFLVAGEDKLIKFWELDNPNILASVHVDGNLSSVPRVRFNRIGSLLAVTTADGRVKIFANADGIKHLRAIQAWSCRVSSKANTNPAMTHLELGESSSARRSKSFTELPEILKCQMITLPDTMYPTAKVARLVYMNNGVGLLAVGSNGTQKLWRWNQTELNPTGKAMASACPVLWRPNSGFVMTNDVPENSEGAIPCAIISRNDSYVLSACGGKLTLFNMLSFKVMVSFMSPPPRSTCLAFHPQDNNVVAIGKEDSSIHIYNIQSEEVKAKLTGDEKCITSLAFSMLLAVLVSSDADAQIFFWSTDTWNLKKSLKMYLRDESPVTGDTQVQFHCNQINLLVCHREVLSLYDASRMELVMQWVPKAHMSGSISCATYSGNGKLIYTALTDGNIVIFNADTLMLRCRIAPSVYLMTPNIPNSENVYPVVLAANPQEPNQFAVGLSNGAIKVIEPNASRRGNNGIGSWVGKFKRAGKPPRNGGRACSSAMEETVSDDGNSGANTI 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01084 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 374 IPR001680 GO:0005515
Aip04g01084 992 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 583 947 IPR027728 GO:0006355
Aip04g01084 992 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 163 569 IPR027728 GO:0006355
Aip04g01084 992 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 166 IPR027728 GO:0006355
Aip04g01084 992 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 583 947 - -
Aip04g01084 992 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 163 569 - -
Aip04g01084 992 Gene3D - 478 602 IPR015943 GO:0005515
Aip04g01084 992 MobiDBLite consensus disorder prediction 179 212 - -
Aip04g01084 992 Gene3D - 615 899 IPR015943 GO:0005515
Aip04g01084 992 MobiDBLite consensus disorder prediction 957 992 - -
Aip04g01084 992 Pfam WD domain, G-beta repeat 339 373 IPR001680 GO:0005515
Aip04g01084 992 SUPERFAMILY WD40 repeat-like 225 415 IPR036322 GO:0005515
Aip04g01084 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 415 IPR001680 GO:0005515
Aip04g01084 992 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 781 943 IPR011044 -
Aip04g01084 992 Gene3D - 154 470 IPR015943 GO:0005515
Aip04g01084 992 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 360 799 IPR011047 -
Aip04g01084 992 SMART WD40_4 755 794 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 282 326 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 466 506 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 712 752 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 668 709 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 226 265 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 419 463 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 332 373 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 509 550 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 375 416 IPR001680 GO:0005515
Aip04g01084 992 SMART WD40_4 844 886 IPR001680 GO:0005515
Aip04g01084 992 ProSitePatterns Trp-Asp (WD) repeats signature. 360 374 IPR019775 -
Aip04g01084 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 762 803 IPR001680 GO:0005515
Aip04g01084 992 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01084 Aip-Chr4 16010706 16022842 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01084 - - ahf:112741705 1950.64