Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01070 ATGGATCCTCTGACAATTAGTGATGAGGTGACTGGCAGTGTGGAAGCAAAGAGAATGTTCAAGGCTTTGATCATTGATGCTCAGAATCTCATTCCCAAGCTCATGCCTCAGGCTATTAAGAACATTCAACTTGTTCAGGGCGATGGTGGTCCAGGATCTATTCAGGAGTTAACCATTGTTCAAGGTTCTGAAACCAAACACTTGAAGCATAGAATTGATGCAATAGACAAAGAGAATCTCACATACAGCTATAGTGTGATTGAGGGGGACAAGGCTGAATCAGTGTCACATGACATAAAATTTGAGCCTACTCCTGAAGGTGGTTGCAAGTCCAAGAGTGTGAGCAAGTTTTATCCCAAACAAGGTGTTGAGATCAAAGAGGAAGATATCAAGGCTTCTAAAGAGGAATCTTTGGCTGTCTTTAAGGTTGTTGAAGCCTATCTTGTTGCTAACCCCGAGGCATATGCTTGA 471 0.4246 MDPLTISDEVTGSVEAKRMFKALIIDAQNLIPKLMPQAIKNIQLVQGDGGPGSIQELTIVQGSETKHLKHRIDAIDKENLTYSYSVIEGDKAESVSHDIKFEPTPEGGCKSKSVSKFYPKQGVEIKEEDIKASKEESLAVFKVVEAYLVANPEAYA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01070 156 SMART Bet_v_1_2 5 151 IPR000916 GO:0006952
Aip04g01070 156 Gene3D - 4 154 IPR023393 -
Aip04g01070 156 SUPERFAMILY Bet v1-like 5 155 - -
Aip04g01070 156 CDD Bet_v1-like 5 148 - -
Aip04g01070 156 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 156 - -
Aip04g01070 156 Pfam Pathogenesis-related protein Bet v 1 family 5 150 IPR000916 GO:0006952
Aip04g01070 156 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Aip04g01070 156 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Aip04g01070 156 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Aip04g01070 156 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Aip04g01070 156 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Aip04g01070 156 PRINTS Major pollen allergen Bet V1 signature 140 150 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Aip04g01070 156 PANTHER - 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01070 Aip-Chr4 15639697 15641031 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01070 - - pvu:PHAVU_009G252400g 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01070 04 15639697 15641031 Aip04g01070 04 15639697 15641031 ECH
Aip01g02859 01 130453708 130454920 Aip04g01070 04 15639697 15641031 PCT