Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01046 ATGGCTTCTTCCCCTTCTTGTTCTAATTATTGTTACAACGGTAACAAGAGTTTGTTAGCATCGGTTATCGTGTCAGTTATTGTGGTAACAATAACGATAAGTAGTGGGGGCGTGGCAATTGCGGAAGGAGGGAGGGTGCCGTTTGCATGTGACCCGAAAAACGGTTTAACGAAGACGTTCAGATTCTGTTGGACGCACGTGCCAATCCACGTGAGGGTGCAGGACCTCATAGGGAGGCTCACATTGGCGGAGAAGATAAGGCTGGTGGTTAATAACGCCATAGCGGTTCCAAGGCTTGGGATTCAGGGCTATGAGTGGTGGTCGGAGGCCTTACACGGTGTTTCTAATGTGGGCCCAGGGACTAAGTTCGGTGGGCCCTTCCCTGGTGCCACTAGCTTCCCTCAGGTCATCACAACCGCTGCTTCTTTCAACCAGTCTCTATGGCTTGAAATCGGACGGGTGGTGTCTGATGAAGCAAGGGCAATGTACAATGGTGGAGCTGCAGGGTTGACATTTTGGAGTCCTAATGTGAACATTTTTCGCGATCCTCGATGGGGTCGTGGCCAGGAGACTCCTGGCGAAGACCCCACCTTGGCCGCGAAATATGCTGCAAGCTATGTGCAAGGACTCCAAGGCAACGGCGCGGGTGACCGGCTCAAGGTGGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAATTGGAACGGCATAGACAGATTTCATTTCAATGCCAAGGTTAGCAAGCAAGACTTGGCGGACACCTATGACGTACCATTCAAAGCTTGTGTGTTGGAAGGGAAGGTGGCTAGTGTCATGTGTTCCTACAATCAGGTCAATGGCAAGCCCACTTGTGCCGACCCCGAACTCCTTCGCAGCACCATCCGCGGCCAATGGGGTCTCAATGGGTTAGTACTTATCTCTCATTCGATTCTTTTTGTTTTTTTTTTTGTCGGAGTATACTATGATAGCCAACACTACACAAGGACGCCGGAAGAGGCGGCGGCGGATGCCATCAAAGCAGGCTTGGACTTGGACTGCGGCCCATTCTTGGCGATCCACACGGATGCGGCCATTAGACAAGGGCTCATTTCAGAGAACGATCTTAATCTTGCTTTGGCTAACCTTATTACGGTCCAAATGAGATTGGGCATGTTTGATGGTGAACCTTCGGCCCAACAGTATGGGAATTTGGGCCCAAGAGATGTGTGTACCCCGGCCCACCAAGAACTGGCCCTTGAGGCAGCTAGACAAGGCATCGTGTTGCTTGAAAACAAAGGGAACGCGTTGCCTTTATCCCCTACGCGGGTTCGCACCGTAGCTGTCATTGGGCCCAATTCAGATGTTACTGTTACAATGATAGGAAACTATGCTGGTGTTGCATGTGGCTACACATCACCATTACAAGGGATTTCAAGATATGTTAAGACCGTACATCAAGAAGGGTGCAGGGATGTTGCATGTGGAGGCAACCAACTATTTGGAGCCGCAGAGATCGCATCCAGGCGAACAGATGCAACAATACTTGTCATGGGCCTGGACCAGTCCATAGAGGCTGAGACCAGGGACAGGGTTGGGCTTCTCTTACCGGGCCTCCAACAGGAGCTTGTGTCCAGAGTTGCCAGGGCCGCCAGGGGCCCAGTTGTCTTGGTCATCATGTCTGGTGGCCCAGTTGATGTCTCATTCGCCAAAAATGATCCCAAGATCACTGCAATTTTGTGGGCTGGTTATCCTGGCCAAGCTGGAGGAACTGCCATTGCTGATGTCATCTTTGGCAGAACCAATCCAGGTGGAAGGCTTCCAATGACATGGTACCCACAAAGCTATCTATCGAAAGTGCCAATGACAATAATGGACATGCGTCCAAACCCATCAACAGGGTACCCAGGAAGAACCTACAGATTCTACAAGGGCCCAGTTGTGTACCCATTTGGGCATGGACTAAGCTACAGTAGATTCTCCCAAACCCTAGTACTTGCACCCAAACAAGTCTCAGTGTCCTTCTCAACTCCCCTCAAAGCCCAAACAAACTCAACTTGGGCCTCATCTTCAATCAAAGTGAGCCATGCAAATTGTGATGCCCTACATATGGGCTTCCATGTTGATGTGAAGAATGAAGGGTCAATGGATGGGACACACACCCTTTTGATTTTCTCTAAGCCACCAATTAAAGGGAATAATAATTGGTCAGAGGATAAGAAATTGGTGAGTTTTCATAAAGTGCTTGTTCCTGCTGGATCAAAGCAAAGGGTTAGTGTTGGTGTTCATGTTTGCAAGCATTTGTCTGTTGTTGATGAGTTTGGGGTCCGAAGGATCCCAATGGGTGACCATGAATTACATATCGGTGATCTCAAGCATTCTATTTCTGTCCAAACTCAGGACTAA 2388 0.4937 MASSPSCSNYCYNGNKSLLASVIVSVIVVTITISSGGVAIAEGGRVPFACDPKNGLTKTFRFCWTHVPIHVRVQDLIGRLTLAEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGPFPGATSFPQVITTAASFNQSLWLEIGRVVSDEARAMYNGGAAGLTFWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGNGAGDRLKVAACCKHYTAYDLDNWNGIDRFHFNAKVSKQDLADTYDVPFKACVLEGKVASVMCSYNQVNGKPTCADPELLRSTIRGQWGLNGLVLISHSILFVFFFVGVYYDSQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTDAAIRQGLISENDLNLALANLITVQMRLGMFDGEPSAQQYGNLGPRDVCTPAHQELALEAARQGIVLLENKGNALPLSPTRVRTVAVIGPNSDVTVTMIGNYAGVACGYTSPLQGISRYVKTVHQEGCRDVACGGNQLFGAAEIASRRTDATILVMGLDQSIEAETRDRVGLLLPGLQQELVSRVARAARGPVVLVIMSGGPVDVSFAKNDPKITAILWAGYPGQAGGTAIADVIFGRTNPGGRLPMTWYPQSYLSKVPMTIMDMRPNPSTGYPGRTYRFYKGPVVYPFGHGLSYSRFSQTLVLAPKQVSVSFSTPLKAQTNSTWASSSIKVSHANCDALHMGFHVDVKNEGSMDGTHTLLIFSKPPIKGNNNWSEDKKLVSFHKVLVPAGSKQRVSVGVHVCKHLSVVDEFGVRRIPMGDHELHIGDLKHSISVQTQD 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01046 795 Gene3D - 407 652 IPR036881 GO:0004553|GO:0005975
Aip04g01046 795 Pfam Fibronectin type III-like domain 733 784 IPR026891 -
Aip04g01046 795 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 421 654 IPR036881 GO:0004553|GO:0005975
Aip04g01046 795 Pfam Glycosyl hydrolase family 3 C-terminal domain 421 651 IPR002772 GO:0004553|GO:0005975
Aip04g01046 795 PANTHER BETA-D-XYLOSIDASE 1 26 794 - -
Aip04g01046 795 SUPERFAMILY (Trans)glycosidases 61 420 IPR017853 -
Aip04g01046 795 Gene3D Immunoglobulins 676 795 IPR013783 -
Aip04g01046 795 Gene3D - 72 396 IPR036962 GO:0004553|GO:0005975
Aip04g01046 795 SMART Fn3_like_2 714 786 IPR026891 -
Aip04g01046 795 Pfam Glycosyl hydrolase family 3 N terminal domain 129 350 IPR001764 GO:0004553|GO:0005975
Aip04g01046 795 PANTHER SUGAR HYDROLASE-RELATED 26 794 IPR044993 GO:0009044|GO:0045493
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01046 Aip-Chr4 15160340 15167710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01046 11 794 Glycoside Hydrolase AT5G49360 70.992 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01046 - - aip:107639006 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01046 04 15160340 15167710 Aip04g01046 04 15160340 15167710 ECH